BAC Information

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BAC

Clone NameMSMg01-369O19
Chromosome14 (Build37)
Map Location 20,915,675 - 20,916,015
singlet/doubletsinglet
Overlap genenone
Upstream geneEG632477, EG632498, EG667341, LOC667344, LOC619996, EG434616, LOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2, 1810063B07Rik
Downstream geneKcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl, Ap3m1, Adk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369O19.T7 (MSMg01no369_o19.b1)MSMg01-369O19.TJ (MSMg01no369_o19.g1)
ACCAG476793AG476794
length738782
length of high quality
(start - end)
458 (67 - 524)146 (123 - 268)
definitionCHROMAT_FILE: MSMg01no369_o19.b1 PHD_FILE: MSMg01no369_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:48 2005CHROMAT_FILE: MSMg01no369_o19.g1 PHD_FILE: MSMg01no369_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTCATGTCACTATACGACTCCTTTTCAAAGAGGATCCGCGGAATTCTT
ATTTCATATAATACTATGTTTTCCTTTTCAACATGTATGTCTGTGTATGC
ATGTAGGCATGCCCATGGGCACACATAGGAGGATACATGTTCACATCTGC
ATGTGGAGATCCAAGGTTGATTTGGGAATTATGCTTTATTGATCTTTCAC
TTTATTAATTGAGACAGGGTCTCTCAACCAATCCAAGCCTGGTCTTGGGC
TAGTCTCTCTAACCAACTTGCTCTGAGGATCTTCTGTGTCCACCCTCCAA
GCCTGGAATTTTTTTATGTCACACCCACCTTGTGTTTACATGGTTGCTGG
TGCTCCCTGGCCCTCATGCCTGTGCCACAAGCAAGAACTATCTCCATAGA
CTGCACCCCTTTTCTGATTTTCTCTGCTCAAAGCTCAGCTGGTATACATG
AACACACAATCTCATTATGGGACAAGATGGCCTTGCTTTAGTGCCTGCTT
GCTTTTAGCGCATATATTTTGGCTGTTAATTATTTTGTTTACATTGCTAG
TTGTTCTACGTATATATTATTTGAGACTTACGTCCGTTCGGATAAGAATC
CTTTTTGTTCTCTTTATGCTTCCTACTTCTTCTAACCTCCTTTTTTTCTT
TCTTTGAATGTCCCTTTTTCCTCCCGTCTTGCTTTTTCCCCTTATTACAT
CTTTTTTTTGCTTTTTTTCGTCTCCTCTAATATTCGTN
ATGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCCAGTCAGGCCACAGTGGCTGGCGT
TTCTCCAGCTCACCAGCACCAGGAATGTAAGTGCACACCACCCGCCTGGC
TTATTCACAGGGGGTCTGGGGGATCAATCTCAGATCCTTGTGCTTGCAGG
GCACTTTACCAGCTGAGCCATCTCTGGACCCTTACTGTAAGATAATAAGT
AATAAGGAGAAGGGGAAAGTGCAGAACACCGATGAGTAAGTGGCCATTGA
TTCTTAATAGCCGTGTTGGTTTGCATGACAAACGGACTACGACAGGTGCC
CTTTCTTGTTGGAGCAAGTGCGTCACTGGCGGGCGCCCTTAATTCCCCCC
CCTCCCCTCTCTCCCCCCTGTTCCTCCTGCTCTTCTCCGCTCTCCCCTCC
CCCCCCCCTCCTCCCTCCCCCCCCCCCCCTCTTTCCCTTCCTTCCCCTCC
CCTCCTCCCCTCCCTCCTCCCTTTCTTCCTTTCCCCCTCCTTCTCCCTCC
CCCCCTACCCCCCTCCTTCTTCTCCCCCCCCCTTCCTCCTTTTCCCCTCC
CTCTCCCCCCCCCCCTCGCTTTTCTCCCGCTACTCTCCCCCATCCCTCCT
CCACTGTGCCCCCCCCTCTTTCCCCCCTCTTAATCTCTCCCTCCCCCCCT
TCTCGACCCTCCCCCCCCCTCTCTTTTCCTCCTTTCGCCCCCCCCCCATC
CCCCCCCCTCCCCCTTCTTTTTTCCCCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_o19.b1 MSMg01no369_o19.b1 CHROMAT_FILE:
MSMg01no369_o19.b1 PHD_FILE: MSMg01no369_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:48 2005
         (458 letters)



>mm_chr14_20915158_20916015
          Length = 858

 Score =  551 bits (285), Expect = e-161
 Identities = 328/351 (93%), Gaps = 16/351 (4%)
 Strand = Plus / Minus

                                                                       
Query: 111 aattatgctttattgatctttcactttattaattgagacagggtctctcaaccaatccaa 170
           |||||||||||||||||||||||||||    |||||||||||||||||||||||||||||
Sbjct: 858 aattatgctttattgatctttcacttt----attgagacagggtctctcaaccaatccaa 803

                                                                       
Query: 171 gcctggtcttgggctagtctctctaaccaacttgctctgaggatcttctgtgtccaccct 230
           |||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 gcctggccaagggctagtctctctaaccaacttgctctgaggatcttctgtgtccaccct 743

                                                                       
Query: 231 ccaagcctggaattttttt------atgtcacacccaccttgtgtttacatggttgctgg 284
           ||||||||||||      |      ||||||||||||||| |||||||||||| ||||||
Sbjct: 742 ccaagcctggaa------taccaggatgtcacacccacctagtgtttacatggatgctgg 689

                                                                       
Query: 285 tgctccctggccctcatgcctgtgccacaagcaagaactatctccatagactgcacccct 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tgctccctggccctcatgcctgtgccacaagcaagaactatctccatagactgcacccct 629

                                                                       
Query: 345 tttctgattttctctgctcaaagctcagctggtatacatgaacacacaatctcattatgg 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tttctgattttctctgctcaaagctcagctggtatacatgaacacacaatctcattatgg 569

                                                              
Query: 405 gacaagatggccttgctttagtgcctgcttgcttttagcgcatatattttg 455
           |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 568 gacaagatggccttgctttagtgcctgcttgcatttagtgcatatattttg 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)