BAC Information

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BAC

Clone NameMSMg01-371F03
Chromosome14 (Build37)
Map Location 80,314,544 - 80,471,714
singlet/doubletdoublet
Overlap geneEG629734, Olfm4
Upstream gene1300010F03Rik, LOC629709, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8
Downstream geneLOC672828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371F03.T7 (MSMg01no371_f03.b1)MSMg01-371F03.TJ (MSMg01no371_f03.g1)
ACCAG477858AG477859
length775779
length of high quality
(start - end)		381 (76 - 456)522 (43 - 564)
definitionCHROMAT_FILE: MSMg01no371_f03.b1 PHD_FILE: MSMg01no371_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:42 2005CHROMAT_FILE: MSMg01no371_f03.g1 PHD_FILE: MSMg01no371_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,471,352 - 80,471,714)(80,314,544 - 80,315,062)
sequence
GAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATCAGGAATTAAACTTTTAGAAATG
GGACTCAGGGTAAATTGTCAAAGGAAGACTAAGATGTCTAAAGAGCTAAC
AATGCTTCGGGGTGTCAAACACAATCAAAGATTTCATTTTTAGTCACTTC
CCTGCTTGCAAGTGGGGAGTAGAGCCATCCATAACAAGTCAGATCAGACC
AGCATTGGGCTGAGCCACACACCTGCAGATGTTGTCGAGTCCAGTTCTAT
CATTGCTCTAATAAAAAGATCTCAGTGTAGCAAAGTCAAGATGTAGCTAT
GACAGTAATCATGATGGGATTATCCAAGAAAGATGTTCACAGGATTTAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
ACCANAGCAAAAGNCATTGCAATAATTATCTCCACAGTTAGCACAAGCTA
AATATTGAGACCCCTGATACTAAGAAAATGAAAGGAAACTTGACTGCTAA
AAATAAACGCCACTATAAAAACCAGCGCAAAAATCTGGGTCTTTCTAAAA
ACAAATGGAATTGGCTTCTGAAAATCGATTGGAAAAAATCCCATATAATT
GTATTAATGGGTGTATTTCCATAATTGTCAACCTACCTTGTTGATGACAA
ATCGTCTCCTCTTTATTTTCTTTCTCTTGTATTCAGTTAAGTAGATATCC
TTGGTGAATTTTGTTTCCTGAACCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACCCAAGTGATATTAGGGTAAAGCTCCCAAGAGTACAGATTTGAAATG
GTAGCAGGGAAGGCTGAGACATAGAGTACAGAACTCAAGGTTGAAAGCAA
TCTAAGAGGTGCCCGCCCGGGCAGGGAGAGTTGCAGGAAAATGAATGACT
AAGAAATTCATGATCCAAGATGCCTGGGTTGCAGGAGCGATTGAGGACAC
TTAGCAAATTGAAGACATTTCTCTTTTATTCACCCCTTGGCTTCATTTAT
TTTTCCCAGCAATTGTTTTCCCAGGACTGCAATGAAATGAACCTCACTCA
TGATTTGTCTAGTCATAATTAGAGTCTTCCTTTTTCTCGTTAGACAGTAA
TGTCAATAATGACTGCAAACATGTTCTCTCCTTTTAAAAAGGCAGAAGGC
CAGCATCATTGTATCTGTGAGTTGATGTCAGATTTGTAATGCAGAGATGC
AAGCTTCACACGCCATATGCGTGCCAAATTTCCATCAAGACTTTGGAAGG
CTTAAACTGTGCATTAAGAAGGGATCCTGTTTTTGTTCTGATGAGTTTTT
TTTTCGCCCTATTAAATAAAGAGGACCGAAAGGCCAGAACTCTTTTGCCT
ATCAAGACTCATTTCCTGGGCGGTCCAGTATTAAGGAAAACATTTCTAAT
AAAAGGAATGAAATTTATTGGATGTTGAAACGGAAAATCCTCCTCTCACG
TTTAAATCCTGCTATTCTCTTTTTTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_f03.b1 MSMg01no371_f03.b1 CHROMAT_FILE:
MSMg01no371_f03.b1 PHD_FILE: MSMg01no371_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:42 2005
         (381 letters)



>mm_chr14_80471193_80471973
          Length = 781

 Score =  671 bits (347), Expect = 0.0
 Identities = 359/363 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcaggaattaaacttttagaaatgggactcagggtaaattgtcaaaggaagactaagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 atcaggaattaaacttttagaaatgggactcagggtaaattgtcaaaggaagactaagat 463

                                                                       
Query: 61  gtctaaagagctaacaatgcttcggggtgtcaaacacaatcaaagatttcatttttagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gtctaaagagctaacaatgcttcggggtgtcaaacacaatcaaagatttcatttttagtc 403

                                                                       
Query: 121 acttccctgcttgcaagtggggagtagagccatccataacaagtcagatcagaccagcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 acttccctgcttgcaagtggggagtagagccatccataacaagtcagatcagaccagcat 343

                                                                       
Query: 181 tgggctgagccacacacctgcagatgttgtcgagtccagttctatcattgctctaataaa 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 342 cgggctgagccacacacctgcagatgttgtcgagtccagttctatcattgctctaataac 283

                                                                       
Query: 241 aagatctcagtgtagcaaagtcaagatgtagctatgacagtaatcatgatgggattatcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 282 aagatctcagtgtagcaaagtcaagatgtagctatgacagtaatcatgatggggttatcc 223

                                                                       
Query: 301 aagaaagatgttcacaggatttagagagagagagagagagagagagagagagagagagag 360
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 aagaaagacgttcacaggatttagagagagagagagagagagagagagagagagagagag 163

              
Query: 361 aga 363
           |||
Sbjct: 162 aga 160


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no371_f03.g1 MSMg01no371_f03.g1 CHROMAT_FILE:
MSMg01no371_f03.g1 PHD_FILE: MSMg01no371_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:43 2005
         (522 letters)



>mm_chr14_80314341_80315262
          Length = 922

 Score =  988 bits (511), Expect = 0.0
 Identities = 517/519 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacccaagtgatattagggtaaagctcccaagagtacagatttgaaatggtagc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacccaagtgatattagggtaaagctcccaagagtacagatttgaaatggtagc 263

                                                                       
Query: 64  agggaaggctgagacatagagtacagaactcaaggttgaaagcaatctaagaggtgcccg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agggaaggctgagacatagagtacagaactcaaggttgaaagcaatctaagaggtgcccg 323

                                                                       
Query: 124 cccgggcagggagagttgcaggaaaatgaatgactaagaaattcatgatccaagatgcct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 324 cccgggcagggagagttgcaggaaaatgaatgactaagaaattcatgatccaagatggct 383

                                                                       
Query: 184 gggttgcaggagcgattgaggacacttagcaaattgaagacatttctcttttattcaccc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gggttgcaggagcgattgaggacacttagcaaattgaagacatttctcttttattcaccc 443

                                                                       
Query: 244 cttggcttcatttatttttcccagcaattgttttcccaggactgcaatgaaatgaacctc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cttggcttcatttatttttcccagcaattgttttcccaggactgcaatgaaatgaacctc 503

                                                                       
Query: 304 actcatgatttgtctagtcataattagagtcttcctttttctcgttagacagtaatgtca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 actcatgatttgtctagtcataattagagtcttcctttttctcgttagacagtaatgtca 563

                                                                       
Query: 364 ataatgactgcaaacatgttctctccttttaaaaaggcagaaggccagcatcattgtatc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ataatgactgcaaacatgttctctccttttaaaaaggcagaaggccagcatcattgtatc 623

                                                                       
Query: 424 tgtgagttgatgtcagatttgtaatgcagagatgcaagcttcacacgccatatgcgtgcc 483
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgtgagttgatgtcagatttataatgcagagatgcaagcttcacacgccatatgcgtgcc 683

                                                  
Query: 484 aaatttccatcaagactttggaaggcttaaactgtgcat 522
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aaatttccatcaagactttggaaggcttaaactgtgcat 722


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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