BAC Information

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BAC

Clone NameMSMg01-371G23
Chromosome14 (Build37)
Map Location 100,045,592 - 100,046,028
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672
Downstream geneEG546623, Klf12, LOC100043413, EG668683, EG668684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371G23.T7 (MSMg01no371_g23.b1)MSMg01-371G23.TJ (MSMg01no371_g23.g1)
ACCAG477943AG477944
length773755
length of high quality
(start - end)
437 (77 - 513)443 (80 - 522)
definitionCHROMAT_FILE: MSMg01no371_g23.b1 PHD_FILE: MSMg01no371_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:52 2005CHROMAT_FILE: MSMg01no371_g23.g1 PHD_FILE: MSMg01no371_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCGATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAGAGCACATTTGGAGACTGGGA
AAGGGCCAGGCCAAACAGAGGAGAATGGCCACAGAGAGTCAATAAGATAA
AGGAAATAAATGACTCAAAGAAGAGTTTTAAGCCAATATTTACACCCATA
TTGCCATATTTACAGCTTAAACACTATGCCCTGAACATGCAGGAAGTAAG
TTTTTATGAGTCTCTTAATGAATGTTAAGTCAATAATATGGCAAACAATG
GGCCCCAGTGAACTTTCCTAGGAAGGCCATACAGAGACCTACTCAAATGG
AGTCAGTCCGTCCAACTCAGGAACTTGAAGTTTTAGAAAAATAAATTTCA
AGTTAGTCAGTTCTGTCATGATATAAAACCAAGCATGTCTGTCATTAGAT
GAAACTAGTACAGAGAAATAGAAGGCTTCCATATTACCTGCAGAAGTGTT
TATTGTCTGGAGAGACAGTGGTCAAAGAACACCTGTCACCATGACTACCA
TCATGTGTGAGCAATCACACGTGTAGACAATTCTAATTTAAGGCCTAATT
AGCAAACTAATGTTCTTAACTGTGAAAGCTATGCTAAGGCAGCANAAAAA
GGGATTCTGTCAAGGGGTTGATGCTACAAAAAAAAAACATGTCTTTTAAA
GCCTTCCCCCCTGTGGGTAGGTCTTTTGTAGAAAAAAAGGTGGGGGGGTC
TCCCCCGCCCTAACCCTTTGGAA
NNNTTTTTCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGAGATCTTTCTGCCTATGTAAGCACAACCAATAAGTTT
AGCTGGGTGAGATCTTGCCCTAAGATCACCATTCCCTAAATTTTTTTTAC
CTCCTTTCTTAATATTTTTCTGACAGGCTCACAAGTACAGTTGCCTCTGT
TCTTTTATGTCCATTAAGCCCCTTGTGCAATTCATATATTTTCCATAGTT
GAGAAATATTCTACAGGACAGCTCTTACACTGACTTATTGAACTCATGCT
TTCAGAGTTCTTTCCCACAGCCTTAAGGTTTATCCTGAAGGTCTCAGCAT
CACAGGGATACATTCTAGCTTCTAAGTTTGTACTGTTTTGGATTATTATG
GAGTCATTAACTGAGAAAGAGGGCATTCCCAAAGGAGGAACATAAAGTAA
GTTACGTATATTAATATTACATTACATTAATACACAAGCTAGCCTTATGC
TCTAGTCCAGGGGTGGGGACTGTGTCATGCTACCCCATGCAAGACTCAGC
TCCAACTGTCTGCTATTTCCAAAAACCTAACTTAGAAAAGAATTCATAAA
TTGAGAGCCCAGGGTTGGAAAATAAAAATCAAGTAAAAAAAAACTGCAAA
ATCCCGGAAGAAGCGTTTTCCTATTCTGAAAAGAAAAAGCCTTTAAAAAT
TGGGGGGAAAAAAAAAAAAAAACACGGTATTATATAAAGGGAAAATTCTC
CCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_g23.b1 MSMg01no371_g23.b1 CHROMAT_FILE:
MSMg01no371_g23.b1 PHD_FILE: MSMg01no371_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:52 2005
         (437 letters)



>mm_chr14_100045392_100046228
          Length = 837

 Score =  845 bits (437), Expect = 0.0
 Identities = 437/437 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagagcacatttggagactgggaaagggccaggccaaacagaggagaatggccacagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagagcacatttggagactgggaaagggccaggccaaacagaggagaatggccacagag 260

                                                                       
Query: 61  agtcaataagataaaggaaataaatgactcaaagaagagttttaagccaatatttacacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtcaataagataaaggaaataaatgactcaaagaagagttttaagccaatatttacacc 320

                                                                       
Query: 121 catattgccatatttacagcttaaacactatgccctgaacatgcaggaagtaagttttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catattgccatatttacagcttaaacactatgccctgaacatgcaggaagtaagttttta 380

                                                                       
Query: 181 tgagtctcttaatgaatgttaagtcaataatatggcaaacaatgggccccagtgaacttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagtctcttaatgaatgttaagtcaataatatggcaaacaatgggccccagtgaacttt 440

                                                                       
Query: 241 cctaggaaggccatacagagacctactcaaatggagtcagtccgtccaactcaggaactt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctaggaaggccatacagagacctactcaaatggagtcagtccgtccaactcaggaactt 500

                                                                       
Query: 301 gaagttttagaaaaataaatttcaagttagtcagttctgtcatgatataaaaccaagcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaagttttagaaaaataaatttcaagttagtcagttctgtcatgatataaaaccaagcat 560

                                                                       
Query: 361 gtctgtcattagatgaaactagtacagagaaatagaaggcttccatattacctgcagaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtctgtcattagatgaaactagtacagagaaatagaaggcttccatattacctgcagaag 620

                            
Query: 421 tgtttattgtctggaga 437
           |||||||||||||||||
Sbjct: 621 tgtttattgtctggaga 637


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)