BAC Information

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BAC

Clone NameMSMg01-371L22
Chromosome14 (Build37)
Map Location 105,078,689 - 105,261,766
singlet/doubletdoublet
Overlap geneD130009I18Rik
Upstream geneSlain1, Ednrb, Pou4f1, 2610206B13Rik
Downstream geneLOC435420, Rbm26, LOC621103, LOC100043466, Ndfip2, LOC620376, LOC100043469
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371L22.T7 (MSMg01no371_l22.b1)MSMg01-371L22.TJ (MSMg01no371_l22.g1)
ACCAG478176AG478177
length792798
length of high quality
(start - end)		461 (79 - 539)378 (49 - 426)
definitionCHROMAT_FILE: MSMg01no371_l22.b1 PHD_FILE: MSMg01no371_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:18 2005CHROMAT_FILE: MSMg01no371_l22.g1 PHD_FILE: MSMg01no371_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,078,689 - 105,079,149)(105,261,392 - 105,261,766)
sequence
NTTTCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCACTTTGGGACAGGAACGAGGA
GAGGAAAGGACTATATCACTATTTGGAAATCAATTCTTCTAGTTAACCTT
CAACCCTTCGTAGCACTCAGCAGGCTCAGGTTAAATGGGCATTTATGGAT
GCTTTTTTTTGAATGCTAATAGGTAGGATAATTACAGTGTTACTTTCTAA
AAAGACTTTATAAATAATCACGACGGCTTCAGAAATGCAGATGGTTCACA
ATTTTAAAAAACGTGCGGTAAAAATTAAGCATGCAACACCACGTAATCTT
AAAATACTATTATTTTAAACTAAAGATATTGACTGCGGACCAACGAAAGG
TAGTGACATACAGTTCCAGAGTAAACCTTATAACGTGTGAAGGACTGAGG
GGACACACAGGAAGGAGGCAGAGACCGAGAGGACACACGGGAAGGAGGCA
GAGACCGATAGGACACACAGGAAGGAGGCAGAGACCAAGAAGACACACAG
GAAGGAGGCCGAGACCAAGAGGACACCCTGGAAGGAGGCCGAGACTGAGA
GGACACACCGGAAGGAGGGCGGACCCCTCCGTGGGGGAACGAAAAACGGC
CAGGACAGGCCCTAATAAAGAAGGGCGGAATTCCTTTTTTCCCTACCCAA
AGGGAGAAATTCCACCACCGGGGTTTCTGAGAAAAAAAACCTTTCTCCCC
CCCCCCCTTTTTTTTTTCCTCAAAAATAACTAGGGGGGGGGA

TTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGCGCATCCG
CGGAATTCAGCCCCTAGGTTTGAAAGTTGTAAACTTTCCAACTGACCTGT
TCTTTGCTCCTTCTTACCTTGAAGACAATGTTTCTTGGGTCTGAGTCTGA
GACTATATCACCAAAGCAAAGAGGAAGAAAGTGAATTCCTCATTTTCTTA
TTTCTCGACAGATGTAAAAGCTGTAAGGTAGTGAAAGAGAAGAAATTTGT
TGACTGTGAAGTCCATCTGGCTGTTCCTTCTCTATCTCCATTGATCACCA
TGTTGATTAGATGGTTGGATGGTCTCTCTTTCTTTTTTAAAGTTCCATTT
ACAAGCCCATCTAGGGTGGGTCCTAGGAAAGATACCCTTCCAGAAGAGGA
GAGCAATTTTTTGCATGAGGGACATATGCATACCTGTGCTTTTCCTCCCT
GGTTGAACCCACAAATAAATTCCCAAGAAACTTGTGTTTATCTTTGTTCT
CACAGAAGCATACATTTTATGAGCTGGAAAACTAAGGTCCAGCAGTTCAG
ACCACTTGTTGTTCCTGGGAAAAAAAGAAAATTGGATTTTTATCTTTCTA
CCGGGGTCTTTTCGGTTCCCTATTTTTTCTTTTTTTTGGGGGTTCAGTGG
GTCTTTTTCGGAATCCCGGGTAGTTGGGGCAAATGGCTTTTTTTTTGTGC
GGCGTGTGGGTGCAAGGCCTCTTTCTCCCATATAAAAAATAAAATTATTT
TGTCGTTTCTTTTTTTTTTATGGTGTAGTAATTATNCTTCTCTTACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_l22.b1 MSMg01no371_l22.b1 CHROMAT_FILE:
MSMg01no371_l22.b1 PHD_FILE: MSMg01no371_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:18 2005
         (461 letters)



>mm_chr14_105078489_105079349
          Length = 861

 Score =  876 bits (453), Expect = 0.0
 Identities = 459/461 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactttgggacaggaacgaggagaggaaaggactatatcactatttggaaatcaattctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactttgggacaggaacgaggagaggaaaggactatatcactatttggaaatcaattctt 260

                                                                       
Query: 61  ctagttaaccttcaacccttcgtagcactcagcaggctcaggttaaatgggcatttatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctagttaaccttcaacccttcgtagcactcagcaggctcaggttaaatgggcatttatgg 320

                                                                       
Query: 121 atgcttttttttgaatgctaataggtaggataattacagtgttactttctaaaaagactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgcttttttttgaatgctaataggtaggataattacagtgttactttctaaaaagactt 380

                                                                       
Query: 181 tataaataatcacgacggcttcagaaatgcagatggttcacaattttaaaaaacgtgcgg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 tataaataatcacgacggcttcagaaatgcagatggttcacaattttaaaaaacatgcgg 440

                                                                       
Query: 241 taaaaattaagcatgcaacaccacgtaatcttaaaatactattattttaaactaaagata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaaaattaagcatgcaacaccacgtaatcttaaaatactattattttaaactaaagata 500

                                                                       
Query: 301 ttgactgcggaccaacgaaaggtagtgacatacagttccagagtaaaccttataacgtgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgactgcggaccaacgaaaggtagtgacatacagttccagagtaaaccttataacgtgt 560

                                                                       
Query: 361 gaaggactgaggggacacacaggaaggaggcagagaccgagaggacacacgggaaggagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 gaaggactgaggggacacacaggaaggaggcagagaccgagaggacacatgggaaggagg 620

                                                    
Query: 421 cagagaccgataggacacacaggaaggaggcagagaccaag 461
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagagaccgataggacacacaggaaggaggcagagaccaag 661


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no371_l22.g1 MSMg01no371_l22.g1 CHROMAT_FILE:
MSMg01no371_l22.g1 PHD_FILE: MSMg01no371_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:18 2005
         (378 letters)



>mm_chr14_105261189_105261966
          Length = 778

 Score =  702 bits (363), Expect = 0.0
 Identities = 372/375 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagcccctaggtttgaaagttgtaaactttccaactgacctgttctttgctcct 63
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ggaattcggcccctaggtttgaaagttgtaaactttccaactgacctgttctttgctcct 519

                                                                       
Query: 64  tcttaccttgaagacaatgtttcttgggtctgagtctgagactatatcaccaaagcaaag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tcttaccttgaagacaatgtttcttgggtctgagtctgagactatatcaccaaagcaaag 459

                                                                       
Query: 124 aggaagaaagtgaattcctcattttcttatttctcgacagatgtaaaagctgtaaggtag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 aggaagaaagtgaattcctcattttcttatttctcgacagatgtaaaagctgtaaggtag 399

                                                                       
Query: 184 tgaaagagaagaaatttgttgactgtgaagtccatctggctgttccttctctatctccat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tgaaagagaagaaatttgttgactgtgaagtccatctggctgttccttctctatctccat 339

                                                                       
Query: 244 tgatcaccatgttgattagatggttggatggtctctctttcttttttaaagttccattta 303
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 338 tgatcaccatgttgattagatgggaggatggtctctctttcttttttaaagttccattta 279

                                                                       
Query: 304 caagcccatctagggtgggtcctaggaaagatacccttccagaagaggagagcaattttt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 caagcccatctagggtgggtcctaggaaagatacccttccagaagaggagagcaattttt 219

                          
Query: 364 tgcatgagggacata 378
           |||||||||||||||
Sbjct: 218 tgcatgagggacata 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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