BAC Information

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BAC

Clone NameMSMg01-372L12
Chromosome14 (Build37)
Map Location 32,822,493 - 32,822,947
singlet/doubletsinglet
Overlap genenone
Upstream geneGlt8d1, Gnl3, Pbrm1, EG432834, Nt5dc2, Stab1, Nisch, Tnnc1, Sema3g, Phf7, Bap1, Dnahc1, Capn7, Sh3bp5, Mettl6, Eaf1, Colq, Hacl1, Btd, Ankrd28
Downstream geneGalntl2, Dph3, Oxnad1, Msmb, Ncoa4, Timm23, Parg, LOC665601, Ogdhl, 1700024G13Rik, Chat, Slc18a3, LOC100040834, EG665618, Ercc6, 9430077A04Rik, Prrxl1, 3425401B19Rik, 1810011H11Rik, 4922501K12Rik, E130203B14Rik, EG665658, Lrrc18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372L12.T7 (MSMg01no372_l12.b1)MSMg01-372L12.TJ (MSMg01no372_l12.g1)
ACCAG478917AG478918
length754855
length of high quality
(start - end)
461 (42 - 502)65 (72 - 136)
definitionCHROMAT_FILE: MSMg01no372_l12.b1 PHD_FILE: MSMg01no372_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:32 2005CHROMAT_FILE: MSMg01no372_l12.g1 PHD_FILE: MSMg01no372_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAACCTTTCCAGGGTCAAAATAGGGGATCAGTTGATAAAGACACTGAGCT
CAGTCCTCAGGACCTACATGGTAGAAAGAGCGATCCCTCCAAGCTCCTTT
GATTCTACGTGTGCTCTGTAATGTACGCACACATAGACAGATAGGTAGAT
GGATAGATAGATAAATGATTTTTCAAATCATGGAAAAACCTATAACTGTC
ATATATATATATATACATATATATATATATATATACACTCCTTGTTATTA
TTCCATAAATTATACACTATAATACTTATTCATATAAAATTTACATGCTA
TTCATTATCTTAAGGCAACTAGTCTTGTGTGTATGCATGTGTGCATGCAC
TTGAGCATGTAGAGACTAAAGGTCAGTATCGAGTGTCTTCACTTATTGTT
CTCTAGCTCATTTTTTTGTTTAGACTGAGTTTCTCAGTAAACCTGAAGCT
AGGTCAGATGACCAATAAGCTCCAAGAATCAGTCTCTACTCTCCTTCTGC
ACCCTCCCTTCACTACCGAGATTACATCACCCCTAATTCCTCACACTTAT
GTGTCTGTGTGGCTTATCCCCTGAGCCATCTCCCCTATCAAGCCTTTGAA
TTTACCTTTAACACTAATGTCTCTTGAACCCCCCCCTTGAGGACCCCGAC
AGGTTCCTCCTCTCTCCCGTATTTAACCGCCCTTTAATTGTTATGAACTC
TTCC
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTCCCACGCCCAATTCAGTGTGTTATACTCATGTCACTTGTATTAG
TCAGGCTTCTCTACACCGACAGAATTTATAGAATGAGTCGCTGTGTGTGT
GTGTGTGTCTCTCGTGCTGTGTGCCCGCCCTCTCCCCCCCCCCCTTCCCC
CTTCTTCCCCCCCCCCCCCCCCTCCTCCTCCCCCCCTCCCCTTCTCCCCC
TCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCTTTTCTCCCCCCCNCCCCC
CCCCCTCTTCCCTCCCTCTTCCCCCCCCCCCCCCCTCCCCCCCCCCCCTC
CCCCCTTTTCCCTCCCCCCCCCCCACTCCCCCCCTCCCCCCTTCTTCTTC
CCCTTTACCCTCCTTCCCCCCCCCCCCTCCCCCCCCCCTCCCCTTCCCCT
CTCCCCCCCCCCCGCCCCTCTCCTCTTTCCCCCCCCTCCTCCCCCCCCCC
TCCTTTCCCCCCCCCCCCCTTCCCCCCCCCCCCCCTCCCCCCCTCTTTTC
CTCCCCTTCTCCCCCCCCCCCTCCCCCCCTCCTTTTTCCCCCCCCTCCCC
CCCCCCTATCCCCCTCTCCTCCCCCCCCCCCCTTTTTTTCCCTCCCCCCC
CCCTCTTCCCCCTCTCTTTTTTCTCCTCCCCTCCCTTTTCCACTTTCTCC
CTCCCCCCCCCCCCCCCCTTCCCCCTTTTTCTTTCCTCCCATCTCCCCCC
CCTTCCTTCCCCCCCCTCCTTTTCCCCCCCCTTTTTCCTCCTCCTCTCTC
TCCCCCCCCCCCCCCCTTTCCGCCCCCCCCTTTTTTTCCCCCTCCCCCCC
CCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_l12.b1 MSMg01no372_l12.b1 CHROMAT_FILE:
MSMg01no372_l12.b1 PHD_FILE: MSMg01no372_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:32 2005
         (461 letters)



>mm_chr14_32822289_32823149
          Length = 861

 Score =  841 bits (435), Expect = 0.0
 Identities = 451/457 (98%), Gaps = 2/457 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaacctttccagggtcaaaataggggatcagttgataaagacactgagctcagtc 64
           ||||||||||   |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaccaaaccagggtcaaaataggggctcagttgataaagacactgagctcagtc 264

                                                                       
Query: 65  ctcaggacctacatggtagaaagagcgatccctccaagctcctttgattctacgtgtgct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcaggacctacatggtagaaagagcgatccctccaagctcctttgattctacgtgtgct 324

                                                                       
Query: 125 ctgtaatgtacgcacacatagacagataggtagatggatagatagataaatgatttttca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgtaatgtacgcacacatagacagataggtagatggatagatagataaatgatttttca 384

                                                                       
Query: 185 aatcatggaaaaacctataactgtcatatatatatatatacatatatatatatatatata 244
           |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 385 aatcatggaaaaacctataactgtcatatatatatatat--atatatatatatatatata 442

                                                                       
Query: 245 cactccttgttattattccataaattatacactataatacttattcatataaaatttaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cactccttgttattattccataaattatacactataatacttattcatataaaatttaca 502

                                                                       
Query: 305 tgctattcattatcttaaggcaactagtcttgtgtgtatgcatgtgtgcatgcacttgag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgctattcattatcttaaggcaactagtcttgtgtgtatgcatgtgtgcatgcacttgag 562

                                                                       
Query: 365 catgtagagactaaaggtcagtatcgagtgtcttcacttattgttctctagctcattttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 catgtagagactaaaggtcagtatcgagtgtcttcacttattgttctctagctcattttt 622

                                                
Query: 425 ttgtttagactgagtttctcagtaaacctgaagctag 461
           |||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttgtttagactgagtttctcagtaaacctgaagctag 659


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)