BAC Information

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BAC

Clone NameMSMg01-373F20
Chromosome14 (Build37)
Map Location 19,548,082 - 19,548,585
singlet/doubletsinglet
Overlap geneUbe2e2
Upstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1, LOC627717, LOC238963
Downstream geneLOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341, LOC667344, LOC619996, EG434616, LOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373F20.T7 (MSMg01no373_f20.b1)MSMg01-373F20.TJ (MSMg01no373_f20.g1)
ACCAG479412AG479413
length723734
length of high quality
(start - end)		562 (14 - 575)523 (58 - 580)
definitionCHROMAT_FILE: MSMg01no373_f20.b1 PHD_FILE: MSMg01no373_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:18 2005CHROMAT_FILE: MSMg01no373_f20.g1 PHD_FILE: MSMg01no373_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTATTTTCAGAGGATCCGCGGAATTCATTTGTTGTTCGCATTGAATGTC
GCACTTGGGTAACTGTTAGAAACATAGCATTTGAAACTGTACAAGTAATA
GATTAAAACTTCCTAAGTTTTTTTAAAACTGTTGTCAATGGTTTTATTTA
TAGCCTGAAATATCTTCTTTATACAGGTTTTTGTTGAAATCAGCATGCTT
CTCAGATTAAAAAAAAAAAAGATTTCTGTGCTTTATGTTAAAAATAATTG
TTGATTCTAGCATCCAAATATTTTCCCAGCTTCATATGTTTACATTCTGA
ATTCCTATGGCAACAAGAAATAGCTGTCTCCTGAGAGATCCTGCCAGAGC
CTTATAAATACAGAGGCAGATGCTTGCAGACAACCATTGGACTGAGTGCA
AGGTCCCAAATAGAGGAGTTAGAGACAGGACGGAAGGAGCTGAAGGGGTT
TGCAATCCCATAGAAAGAACAACAATATCAACCAACCTGACACACACACA
CACATACCCAGAACTCCTAAGGTCTAAGCCACCAACCAAGGAGTACACAT
GGCTTCAGTTGCATATGTAGCAGAGGACAGCCTTGTCAGGCATCAATGGG
AGGAGCGGTCCTTCGTCCTATGAAGGCTTGATAGATGCCCCAGTATCAAG
AGGGGGGGCTCATATAAACGGGGGAGGGGGATGAAGGGGTAACCCGCAAA
TGGTGAATTTGAATTTTTATTAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCAAGTTTGTAGGCTTCAAGGTCTTTCTAGGACGTTCGAACACT
GGCAAAGGCTAGCTATGTCAGAATTCAATCTTAAAAGGCACTTATAATAA
GATAATACTAAAAGAGAGCACGTGGGTTCATACCCCAGACTAACTCGGGG
ATAGGGTAAGAATATACGGGTTATGAAAACGGCAAGGTTCCAGGAGATGA
GTTTCCGTGAAACTCTTTGTCTCCTGAGTGCTCCCAGGCCTCTCGGCCTG
CCAAGCAAACTTCACTGGAGTTGCATAGCATTCCCCCATTCTTATATTTC
TGCTGAAGTTCCAGAATGTCCCACCTTGTCATAGCTACAGATCTCAGGAG
TGCTATAAAGAGGAGTGGAAACACAACGATTTATTAATAAAATAATGTCA
ATAATAATAGCAAGTAGGATAATATATTGAACCCAATCCAGGGGATTTAA
TGCACTTAGGTTATTTTTTTAAATCTCTGGCCAATTCATCAATGTTCCAA
GTGTCTGAGTGACTATTTGCTAATATCTGANATTTCTGCCTTTCTAGCCT
TAATATTTGTTATGTTCTGCCCTATTGTTAAGACTACTACTTCTAAGACA
TTAACTTTTGCCTCCCATTCTTTACATGGGTCTGTGGTGTATTATTAATA
AACTATGGCCTCTTTGCGCTGGTACTCCTGTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_f20.b1 MSMg01no373_f20.b1 CHROMAT_FILE:
MSMg01no373_f20.b1 PHD_FILE: MSMg01no373_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:18 2005
         (562 letters)



>mm_chr14_19548082_19549044
          Length = 963

 Score =  948 bits (490), Expect = 0.0
 Identities = 502/508 (98%), Gaps = 5/508 (0%)
 Strand = Plus / Minus

                                                                       
Query: 9   gaattcatttgttgttcgcattgaatgtcgcacttgggtaactgttagaaacatagcatt 68
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gaattcatttgttgtttgcattgaatgtcgcacttgggtaactgttagaaacatagcatt 445

                                                                       
Query: 69  tgaaactgtacaagtaatagattaaaacttcctaagtttttttaaaactgttgtcaatgg 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgaaactgtacaagtaatagattaaaacttcctaagtttttttaaaactgttgtcaatgg 385

                                                                       
Query: 129 ttttatttatagcctgaaatatcttctttatacaggtttttgttgaaatcagcatgcttc 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttttatttatagcctgaaatatcttctttatacaggtttttgttgaaatcagcatgcttc 325

                                                                       
Query: 189 tcagatt-aaaaaaaaaaaagatttctgtgctttatgttaaaaataattgttgattctag 247
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcagattaaaaaaaaaaaaagatttctgtgctttatgttaaaaataattgttgattctag 265

                                                                       
Query: 248 catccaaatattttcccagcttcatatgtttacattctgaattcctatggcaacaagaaa 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 catccaaatattttcccagcttcatatgtttacattctgaattcctatggcaacaagaaa 205

                                                                       
Query: 308 tagctgtctcctgagagatcctgccagagccttataaatacagaggcagatgcttgcaga 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tagctgtctcctgagagatcctgccagagccttataaatacagaggcagatgcttgcaga 145

                                                                       
Query: 368 caaccattggactgagtgcaaggtcccaaatagaggagttagagacaggacggaaggagc 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 caaccattggactgagtgcaaggtcccaaatagaggagttagagacaggacggaaggagc 85

                                                                       
Query: 428 tgaaggggtttgcaatcccatagaaagaacaacaatatcaaccaacctgacacacacaca 487
           |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||
Sbjct: 84  tgaaggggtttgcaatcccatagaaagaacaacaatatcaaccaacctg----acacaca 29

                                       
Query: 488 cacatacccagaactcctaaggtctaag 515
           ||||||||||||||||||||||||||||
Sbjct: 28  cacatacccagaactcctaaggtctaag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 963
Length adjustment: 10
Effective length of query: 552
Effective length of database: 953
Effective search space:   526056
Effective search space used:   526056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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