BAC Information

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BAC

Clone NameMSMg01-373G05
Chromosome14 (Build37)
Map Location 58,715,175 - 58,715,535
singlet/doubletsinglet
Overlap geneFgf9
Upstream geneGjb2, LOC100043515, Gjb6, LOC668140, Cryl1, LOC668090, AU040096, Ift88, Il17d, N6amt2, Xpo4, Lats2, Sap18, F630043A04Rik, Mrp63, Zdhhc20, Efha1, LOC668160, LOC100043554
Downstream geneEG668177, EG668182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373G05.T7 (MSMg01no373_g05.b1)MSMg01-373G05.TJ (MSMg01no373_g05.g1)
ACCAG479430AG479431
length737810
length of high quality
(start - end)
576 (19 - 594)421 (123 - 543)
definitionCHROMAT_FILE: MSMg01no373_g05.b1 PHD_FILE: MSMg01no373_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:20 2005CHROMAT_FILE: MSMg01no373_g05.g1 PHD_FILE: MSMg01no373_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCCTATTTCGAGAGGATCCGCGGAATTCAACCCTTTCCCCTCCAAGT
TGATTTCAGTCATGTTGTGTGAGACCTCAGCTTAGAGCGTTTCTCCCTGG
AAGGTAAAGCCCCAAGCTTGTTTTCCCTGATCTCTAAAAATGCAGCCAGA
AAGAAGCTCTTTGTTCTCTATAGCAAAAAACCTTTTTGTTTCTGTGCCTT
ACAGCCAGAGATGTGATAATTGTAGGAAGACCTACAAGGACATAGAGATA
GACGAGAGGAGGCTGCAGCTCACTCCCCTCCCCCTCCCCCCTTGCCAGAA
AAGAGATGTAGCCAACTCTCCTCCCAACTCCTCCCAATTCCTCAGCTAGC
TGTTAAAAGCCCCCTACTGTTACCACTCAGGGTCGAACTCCCCTGTCCTG
CACAGTGGAGGGACTTCATCCTCAGCTAGCTGATAATAAAACCTCTTGCA
TTTTGCATTAGGTGTGGTTCTCTTTCGAGTCATTGGGGTGCTGGCCAGCT
CATCCCGGGACTTGAGCGGAGGCCCAGCTTTGGGGGTCTTACAGTTGTTT
GTCACAGCACAGGAAACAGACTAGAAGAGAGGTTGGCACAGGATCATGGA
GTACTGTTGTCCCAGATCTGAACATGGTGTTTTTAGAAGGACTGTGGAAG
AAATTTGGGGTTTTTGAGAAAAAAAAAAAATCCTGTGTTCCAAATTTTTA
TGGACCTTGCCCACTGATTTTGGTAAAAAAACAATAA
GAGATGGGGAGAGAGGGGAGGAGAGAGGGGAGGTGGGNAGTGGGGAGGGN
TGCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAACTTGCGAGAAACACAAGGTATCATGT
CTCTCGTGCAGTAAGATGCCACAGAGGGCACAGACACAGCTCTGTCACAT
GGGTTCTTGAGGAACACTAGGGAACAAGGGTAAGCTGAGCAGTAGCGTGG
CCAGTGCTAAGCTGGTCACATCACAGGCACTGTCTCCTCCCATGGTCATA
GCATTGCTATAGCAACTGTCATCAGCCCTTGCTATAGCCTCAGCTCAAGA
AGTTAACACTGACCAACAGTTGATGGTTGCCAGGGCAGTGGGAGTCATTT
TCTCCAGTGATATAGCCACTAGGAAGAGGCTATGCTCCAGTAAATAACCC
CCATTCATGCTCATACAGGTAACCCTATTAAATTCAGGGGGTCACATTAA
ATATGGGAGTAAGAAGGAGATTTGTTAGGAAGAAGAAAGGTTTTAGCAGA
GTGAATGGGGATTGAGAGAGGATGTTGGTGTAAATACGTTCAACTTTGGC
ATTTGCTTGCTCGATTTCTCATTAGTTATTTCTTTTGATTTCTTCACTGA
TTTACTTTTCGATTGTTATTTACTCTTCCTTACATTCGCTTCCATGGGTG
TACTATCTTCCTGTCTTTATTCGCTCTTTTTATTGTTATCGTTATTCTTC
ACACTTTTCTTGGTATAATTGCTTTTATTCTGTTCATTTCCTTTTCTCAA
TCCTGTCCGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_g05.g1 MSMg01no373_g05.g1 CHROMAT_FILE:
MSMg01no373_g05.g1 PHD_FILE: MSMg01no373_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:20 2005
         (421 letters)



>mm_chr14_58715102_58715922
          Length = 821

 Score =  540 bits (279), Expect = e-158
 Identities = 355/421 (84%), Gaps = 63/421 (14%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacttgcgagaaacacaaggtatcatgtctctcgtgcagtaagatgccacagagggcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 aacttgcgagaaacacaaggtatcatgtctctcgtgcagtaagatgccacagagggcaca 375

                                                                       
Query: 61  gacacagctctgtcacatgggttcttgaggaacactagggaacaagggtaagctgagcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gacacagctctgtcacatgggttcttgaggaacactagggaacaagggtaagctgagcag 315

                                                                       
Query: 121 tagcgtggccagtgctaagctggtcacatcacaggcactgtctcctcccatggtcatagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tagcgtggccagtgctaagctggtcacatcacaggcactgtctcctcccatggtcatagc 255

                                                                       
Query: 181 attgctatagcaactgtcatcagcccttgctatagcctcagctcaagaagttaa---cac 237
           ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||   |||
Sbjct: 254 attgctatagcgactgtcatcagcccttgctatagcctcagctcaggaagttaagaacac 195

                                                                       
Query: 238 tgaccaacagttgatggttgccagggcagtgggagtcattttctccagtgatatagccac 297
           ||||||||||||                                                
Sbjct: 194 tgaccaacagtt------------------------------------------------ 183

                                                                       
Query: 298 taggaagaggctatgctccagtaaataacccccattcatgctcatacaggtaaccctatt 357
                       ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ------------atgctccagtaaataacccccattcatgctcatacaggtaaccctatt 135

                                                                       
Query: 358 aaattcagggggtcacattaaatatgggagtaagaaggagatttgttaggaagaagaaag 417
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 134 aaattcagggggtcacattaaatatgggaataagaaggagatttgttaggaagaagaaag 75

            
Query: 418 g 418
           |
Sbjct: 74  g 74


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)