BAC Information

Click to search

BAC

Clone NameMSMg01-373H12
Chromosome14 (Build37)
Map Location 17,795,598 - 17,795,887
singlet/doubletsinglet
Overlap genenone
Upstream gene1700062C10Rik, LOC667209, EG435389, Oxsm, Ngly1, Top2b, Rarb, Tpi-rs9
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373H12.T7 (MSMg01no373_h12.b1)MSMg01-373H12.TJ (MSMg01no373_h12.g1)
ACCAG479492AG479493
length724718
length of high quality
(start - end)		290 (302 - 591)398 (57 - 454)
definitionCHROMAT_FILE: MSMg01no373_h12.b1 PHD_FILE: MSMg01no373_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:26 2005CHROMAT_FILE: MSMg01no373_h12.g1 PHD_FILE: MSMg01no373_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTACCTATTTCCAGAGGATCCGCGGAATTCATGTCATTTCGAAGTTCTAG
GGAAGTCTTTCCAGTCAGTCCTAAACCTTTAATCATAGTGCTGCTCCTTT
GTCCGTGGATATTTCTGAATCCGAATTAGGAGGAAAGGCAAGCTCCAAAT
TGAGCCTTTTCATCCTATGGTCTCAGCAATTAGATTTCTTTCTACTTTTA
CTAAAAACAATGCAGATTTTTGCCTCCTGTTCTTTCTGAATTATTTGCAG
AGTTTGGCAGCAAGGCTTCAGATTCCAGCTCATAAATCTCAACTATATTT
ATTGATCACTCTTCATGCTTCTCTCTATTGTTCTTAAAATGTAAAAACTA
CCTCATTAAGTTAAGAAAAAGGGGACAGGTTTCCACAGTGAAATGTCAAC
CCAAGAAAGAAATCCCTGAGAAATTAATATAATGAAACAAAGGTGGTTTT
CTGCAGCAGAACATGTGTGCTAAATTGCACTTTACATGATTCTTAGGCCA
ATTTGCTTCCTTCTTGACTCTACTTCATCACTTTCCCTCAGTGATGAAGA
AGGAGTGAAAGGCCACAGTGACCCATGCATCACCGAGGAGAGGAAGTGCC
ACACTGACCTTGGCAGTACAGTGACGATCTCTGCAGGCACAGGCACCTAC
GTTAATGATGGATATTCACCTTTCCTGTTTAAATAGAGACTCCTGGCATA
TCCCCCTTTCTGAAAAAAATCTCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTTGTTCAGTTCTGAGCCCCATTTTTTAATGCGGTTATTTGATT
TTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCC
CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCT
TTTTGTCTTTTTTTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATT
TCCAATGCTATACCAAAAGTCCCCCATACCCACCCACCCCCACTCCCCTA
TTTTTTTACTCCCCCTTTTTGGCCCTGGCCTTCCCCTGTACTGGGGCACA
CAAAGTTTACGGGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGATTAGG
CCATCTTTTGTTACATATGCAGCTAGAGTCAAGAGCTCCGGGGCACTGGT
TAGTTCATAATGTTGTTCCACCTATAGGTTGCAGATCCCTTTAGCTCCTT
GGGTTCTTTCTCTAGTTCCTCCCTTGCCAGCCCTGCGAATCTATCCATTA
TCTGATTGGGAGTTTCTACCTTCTGTGTTTGTTAGCCCCTCTCTTCTCTT
ACCATATATAGCTACACCCGGGTCCCTTCCACATATTTTTTGTTTGTCAT
TGCCCCGGCGTCCCCGATCGGTATGTTATTATGTCTTTGACTCCCTGAAT
GTTGGCTTTTCTGAGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_h12.b1 MSMg01no373_h12.b1 CHROMAT_FILE:
MSMg01no373_h12.b1 PHD_FILE: MSMg01no373_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:26 2005
         (290 letters)



>mm_chr14_17795398_17796087
          Length = 690

 Score =  553 bits (286), Expect = e-162
 Identities = 289/290 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgatcactcttcatgcttctctctattgttcttaaaatgtaaaaactacctcattaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 ttgatcactcttcatgcttctctctattgttcttaaaatgtaaaaactacctcattaggt 260

                                                                       
Query: 61  taagaaaaaggggacaggtttccacagtgaaatgtcaacccaagaaagaaatccctgaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taagaaaaaggggacaggtttccacagtgaaatgtcaacccaagaaagaaatccctgaga 320

                                                                       
Query: 121 aattaatataatgaaacaaaggtggttttctgcagcagaacatgtgtgctaaattgcact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattaatataatgaaacaaaggtggttttctgcagcagaacatgtgtgctaaattgcact 380

                                                                       
Query: 181 ttacatgattcttaggccaatttgcttccttcttgactctacttcatcactttccctcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttacatgattcttaggccaatttgcttccttcttgactctacttcatcactttccctcag 440

                                                             
Query: 241 tgatgaagaaggagtgaaaggccacagtgacccatgcatcaccgaggaga 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgatgaagaaggagtgaaaggccacagtgacccatgcatcaccgaggaga 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |