BAC Information

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BAC

Clone NameMSMg01-373M10
Chromosome14 (Build37)
Map Location 14,863,996 - 14,864,597
singlet/doubletsinglet
Overlap geneAtxn7
Upstream geneEG328354, Synpr, A430083B19Rik, EG382844, LOC100042045, Gm281, Thoc7
Downstream genePsmd6, Olfr720, LOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1, LOC667152, LOC100042147, Slc4a7, Nek10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373M10.T7 (MSMg01no373_m10.b1)MSMg01-373M10.TJ (MSMg01no373_m10.g1)
ACCAG479726AG479727
length719739
length of high quality
(start - end)		608 (19 - 626)555 (77 - 631)
definitionCHROMAT_FILE: MSMg01no373_m10.b1 PHD_FILE: MSMg01no373_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:48 2005CHROMAT_FILE: MSMg01no373_m10.g1 PHD_FILE: MSMg01no373_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCCTATTTCGAGAGGATCCGCGGAATTCTTCATTGTACTCTCCTTGTC
TATCTTGCCAATGTCTTCAACAATTTTGACAATATTTCTTCTGGCGTAGA
TGGTTATCTTCATCGACCATCTCTTCTTTAAGTTGTTGACTTAACGTCTC
TTACGTCCTGTAGATGGCTTAGGTGATGGGCATCTGTGAGGAGAAACCTT
TGTCAGAGGGGGAGAGCCTTAAGCTTCCCCGTGGTGAAGAGAGGCTGCTG
TGAGTTCAGAGGTTCTCAAGCATTGCCCGTGAAATAATGGAGTATTGTTT
TATATTATGTAAGTATTACAAATGGATTATTATGTAGAAAGAATACACTT
TTGTCAGATTTCTAGAAGCCTTCAGGAACTATCAGGTTTTGCTACCAGCA
TATAAAAATGCAGTCTATTTAAAAGATAATTGTCAGCCTCCATTATTATT
TTATTTGTAATAAAAGCAGGAGTTTTGTTGTTGATAATGTTCATATGTTC
AAACTATTTTTAAAATTCCTTGTGTTTTTTTCTAGCATTTTGTTTTGGTT
AACTGATACTTTCCCAGNCTTGTTTCCTCTCATTTTCTCTGCACTGTTAG
CATGGATGATGCAAAGCATTGAGGGATGAGTGAATGTAAAGTGGACCAGC
CTGAAGCCCCCTCCCTTTTTTTTGTCCTAAGGACTGCCTATAGGTATATA
TCCTTCCAAAATACAACTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAAACCTGATAAACAGCTTCGGT
GAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTA
TACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACGCTTCT
CAATAGTCACAAATAATATAAAATATCTTGGTGTGACTCTAAATAAGGAA
GTGAAAGATCTGTATGATAAAAACTCCAAATCTCTGAAGAAAGGAATTAA
AGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGA
CAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATG
CAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTAGAAGGAGCA
ATTTGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAAGTCT
TCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTANAGC
TTTACTACAGAGCAATTGTGATAAAAGCTGCATGGTACTGGTATAGCGAC
AGACAAGTAGACCAATGGAACAGAATTGAAGACCCAGAAATGAACCCACA
CACCTATGGTCACTTGATCTTCGACAAGGCAGCTAAAACCATCCAGTGGA
AGAAAACAGCATTTTCAAAATTGGTGCTGGCACAACTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_m10.b1 MSMg01no373_m10.b1 CHROMAT_FILE:
MSMg01no373_m10.b1 PHD_FILE: MSMg01no373_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:48 2005
         (608 letters)



>mm_chr14_14863790_14864797
          Length = 1008

 Score = 1096 bits (567), Expect = 0.0
 Identities = 593/606 (97%), Gaps = 8/606 (1%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcttcattgtactctccttgtctatcttgccaatgtcttcaacaattttgacaata 66
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcttcattgaagtctccttgtctatcttgccaatgtcttcaacaattttgacaata 266

                                                                       
Query: 67  tttcttctggcgtagatggttatcttcatcgaccatctcttctttaagttgttgacttaa 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tttcttctggcgtagatggttatcttcatcgaccatctcttctttaagttgttgacttaa 326

                                                                       
Query: 127 cgtctcttacgtcctgtagatggcttaggtgatgggcatctgtgaggagaaacctttgtc 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cgtctcttacgtcctgtagatggcttaggtgatgggcatctgtgaggagaaacctttgtc 386

                                                                       
Query: 187 agagggggagagccttaagcttccccgtggtgaagagaggctgctgtgagttcagaggtt 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 agagggggagagccttaagcttccccgtggtgaagagaggctgctgtgagttcagaggtt 446

                                                                       
Query: 247 ctcaagcattgcccgtgaaataatggagtattgtttta----tattatgtaagtattaca 302
           |||||||||||||||||||||||||||||| ||    |    ||||||||||||||||||
Sbjct: 447 ctcaagcattgcccgtgaaataatggagtagtg----aaaaatattatgtaagtattaca 502

                                                                       
Query: 303 aatggattattatgtagaaagaatacacttttgtcagatttctagaagccttcaggaact 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 503 aatggattattatgtagaaagaatacacttttgtcagatttctagaagccttcagaaact 562

                                                                       
Query: 363 atcaggttttgctaccagcatataaaaatgcagtctatttaaaagataattgtcagcctc 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 atcaggttttgctaccagcatataaaaatgcagtctatttaaaagataattgtcagcctc 622

                                                                       
Query: 423 cattattattttatttgtaataaaagcaggagttttgttgttgataatgttcatatgttc 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cattattattttatttgtaataaaagcaggagttttgttgttgataatgttcatatgttc 682

                                                                       
Query: 483 aaactatttttaaaattccttgtgtttttttctagcattttgttttggttaactgatact 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aaactatttttaaaattccttgtgtttttttctagcattttgttttggttaactgatact 742

                                                                       
Query: 543 ttcccagncttgtttcctctcattttctctgcactgttagcatggatgatgcaaagcatt 602
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ttcccagccttgtttcctctcattttctctgcactgttagcatggatgatgcaaagcatt 802

                 
Query: 603 gaggga 608
           ||||||
Sbjct: 803 gaggga 808


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space:   596804
Effective search space used:   596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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