Query= MSMg01no374_k08.b1 MSMg01no374_k08.b1 CHROMAT_FILE:
MSMg01no374_k08.b1 PHD_FILE: MSMg01no374_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:56 2005
(560 letters)
>mm_chr14_11058193_11059151
Length = 959
Score = 1021 bits (528), Expect = 0.0
Identities = 549/556 (98%), Gaps = 1/556 (0%)
Strand = Plus / Plus
Query: 5 ggaattcataaaacaattccattcctttccattaacctgacagcatgggtttctaaaata 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcataaaacaataaaattcctttccattaacctgacagcatgggtttctaaaata 264
Query: 65 agaaattaaattccagcaagtgaatataattttatatatttgactttgtgtaattaatca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaaattaaattccagcaagtgaatataattttatatatttgactttgtgtaattaatca 324
Query: 125 tgccgtctatatggtcagtcaaaatgcagcttaatatactagaaaaaagcagcagaatgg 184
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 325 tgccgtctatatggtctgtcaaaatgcagcttaatatactagaaaaaagcagcagaacgg 384
Query: 185 cccattctgaatactgcactactgagaatacccacaaaagtggtactaatatttgtgagg 244
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cccattctgaatacttcactactgagaatacccacaaaagtggtactaatatttgtgagg 444
Query: 245 agatttttacctctgtattttattgaattctgaagtttctgtacatctgtaagaatagga 304
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agatttttacctctgtattt-attgaattctgaagtttctgtacatctgtaagaatagga 503
Query: 305 gatcaaaggcatgggtggacagagtggggagaggatatatgtatctaaaagcaaccttct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gatcaaaggcatgggtggacagagtggggagaggatatatgtatctaaaagcaaccttct 563
Query: 365 tataacagtcaacttccctagcagcaggccttagagttaagggtatcaggcagttagaag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tataacagtcaacttccctagcagcaggccttagagttaagggtatcaggcagttagaag 623
Query: 425 ggagatacttctaggcagctcacacttatccatcccaccacattattcagttccatctgc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggagatacttctaggcagctcacacttatccatcccaccacattattcagttccatctgc 683
Query: 485 agcattggagaaagaaaggtttgacacactgtcactgataagttattaatgctgctctac 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agcattggagaaagaaaggtttgacacactgtcactgataagttattaatgctgctctac 743
Query: 545 atttcccaatgctccc 560
||||||||||||||||
Sbjct: 744 atttcccaatgctccc 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 959
Length adjustment: 10
Effective length of query: 550
Effective length of database: 949
Effective search space: 521950
Effective search space used: 521950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no374_k08.g1 MSMg01no374_k08.g1 CHROMAT_FILE:
MSMg01no374_k08.g1 PHD_FILE: MSMg01no374_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:57 2005
(460 letters)
>mm_chr14_11228173_11229032
Length = 860
Score = 866 bits (448), Expect = 0.0
Identities = 457/460 (99%)
Strand = Plus / Minus
Query: 1 actggctttatttggaggcataataaaggtatgtgatattgtttaactgtttgttcaacg 60
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 660 actggctttatttggaggcgtaataaaggtacgtgatattgtttaactgtttgttcaacg 601
Query: 61 ttggctagtgcagtggaatacaaatatttgaccttcttgacaaagattgatgggttgaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ttggctagtgcagtggaatacaaatatttgaccttcttgacaaagattgatgggttgaag 541
Query: 121 caacacagcatgatatcattaggctgtcaaataacatcattattcatgattacaaggaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 caacacagcatgatatcattaggctgtcaaataacatcattattcatgattacaaggaat 481
Query: 181 tattcaggtgaaatggcaaacctattatttgtacagagagaataattgcactgtccttgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tattcaggtgaaatggcaaacctattatttgtacagagagaataattgcactgtccttgt 421
Query: 241 catttcaaccccttggttgaactgacaataagatatgtgtatttattttactacagaaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 catttcaaccccttggttgaactgacaataagatatgtgtatttattttactacagaaat 361
Query: 301 ctttaatagcctaatttaaataaatggaaccaattacaattagcaattgagcaaatcaga 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 360 ctttaatagcctaatttaaataaatggaaccaattacaattagtaattgagcaaatcaga 301
Query: 361 tcatatacactcttcttgaaagaagttggtattctataaatctagaaagacattttcatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tcatatacactcttcttgaaagaagttggtattctataaatctagaaagacattttcatc 241
Query: 421 atttatggaatttttcatctatacagattaattttcagtt 460
||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 atttatggaatttttcatctatacagattaattttcagtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space: 382500
Effective search space used: 382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
