BAC Information

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BAC

Clone NameMSMg01-374L01
Chromosome14 (Build37)
Map Location 63,974,866 - 63,975,219
singlet/doubletsinglet
Overlap genenone
Upstream geneRnaseh2b, Gucy1b2, LOC100042960, Ppia-ps14_723.1, LOC545062, EG629059, E130113E03Rik, Ints6, LOC100042969, LOC668263, Wdfy2, LOC668268, EG432867, EG654465, EG654458, 2410125J01Rik, Defb42, LOC100042978, Ctsb, Fdft1, Neil2, Gata4, LOC100042988, LOC432868
Downstream geneBlk, LOC668293, BC065085, Tdh, Mtmr9, Xkr6, LOC668306, 2610028A01Rik, Sox7, 4930578I06Rik, Rp1l1, 4933401F05Rik, 1700007N14Rik, 1700049K14Rik, Msra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374L01.T7 (MSMg01no374_l01.b1)MSMg01-374L01.TJ (MSMg01no374_l01.g1)
ACCAG480425AG480426
length818872
length of high quality
(start - end)
270 (234 - 503)355 (125 - 479)
definitionCHROMAT_FILE: MSMg01no374_l01.b1 PHD_FILE: MSMg01no374_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:00 2005CHROMAT_FILE: MSMg01no374_l01.g1 PHD_FILE: MSMg01no374_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATAAAATGCGGACGCTAAACGATTCACTAATTTCAGAGGATCCGCGGAA
TTCTCAGTTTCATTTTACTGCCATTTCTAATAAAATATATTAGTGAAAAC
TACTATTTACTGATCAGCATATACGTAAAATTCAGTCTAGCACATTAACA
ACCTGTAGAGCTTCAATGAGATAAGGCAATAGATTCAAAGATAATTTAAA
AGTCGCCATCTCCTTTAAAATGTGGAAAGACAAGATTTCACAGGAAAAAA
AACTGAACAGCTGTTCTCTTTTGAGACAGTCTTCCTCTTGTAGCCCAGAC
AGTCCTAGAACTCACGGCAATTCTCCTGTCTCAGCCTCCTCACTGCTCAA
GTTACAGCTGTGATCTACCACACCCAAGGTGAGCAGCTCTTTGCAAAGCT
CACTGTTACCATGCCCCACAAATTGCTTCGCAGCATTTCTCAACTTATGG
GTCCTGACCCCTTTGGGAGTCAATGACCCTTTCACAGGAGTTGCTGAACA
CCGCTGACAAAGCAGAGATTTACATTTACAATTCCTAATAGCACAAAAAT
TACCGTTATGAAATAGCGCAATTTTGTTATGGTCGGTTGTGCAGCCCTAC
TTGATTTAGCTGTATCTAAAGGTTCCCAAATTTTAAGTAATTTTGGTAAT
CTCATTGGACTAATTTTCCTTCTCTTCTTGTGTCTGTCTAACTTTATAAA
GGTATCTCGGCCTCACAACCTACTTTCCTTTATGTTCTAGCCACTCCTCC
CCCTCTTTTTTCTGCGTTTCACCCACTTTATTTATCCTCTTCCTTTTCTC
TCTCCTTTCATCCTCCTC
ATTCTTTCCCCCCCCCCCCCCCTCCTATCTTCCTCCCCCCCTACCTTTTC
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATCCATCAGGGAGACCCTTCTGCAGG
AAGAGGCCCATCTCAGGGGAGGACTGTCTAGAGCGGAGGCCAGCAGGTAG
AAATAAGAGACGTGGATGGTCTGTGACTCGTGTTCGTCAATCTCGTGCCT
GGTACCCCCACCTCAAGGCATCTGTCCTAACTTCCCTAGGAAGTAGAACT
TCCACCTCTACATTTAGCCGACTTAAGGGTCTCAACTATCATCAACAAGA
AGTTCATTTAAGATCTAAATGGAAGTCTATACACATCCCTTTGCTTTTAT
CATGCCCCCAATGGACTCCTGCCGATCCTTCTAAACCCAGTCCGATTACT
CCCCCGTTTATGTGCCCTGCCCTCTGTGAGGCTACAATTACTTCATTGAG
TTCATTGGCATTTCCATAACTGTCTGCTACCTGCCACGCACACCTTTGGC
CCCTGTGAATGCGTGATTAACCAGTTAGGTCGGAATTCCTTCCCTCCTTT
CGTGCATGTGCCTTATTTTCGTTCATCTCACACCTCATTTTTCCTTCTTT
ATTAATACCCGTTCCGTCTTTTCATCTCCCTCCCTTCCCCGCTGTCTTTT
GATTTCCTTTCTTACTTTACTTTCTCCCCTCCTCCTTCTCTGCCATTCCC
CTTTCTTCTCTCCTCCTTTTCTTGCACACTCCCCTGTTATCATCTCCGTT
ATCATTGTTCGCCTATCCCATTCGCCTCTTCTTTGTTGTTTTTCTGCTCT
TCTTCTTTTCTTTTTCTCCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_l01.g1 MSMg01no374_l01.g1 CHROMAT_FILE:
MSMg01no374_l01.g1 PHD_FILE: MSMg01no374_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:00 2005
         (355 letters)



>mm_chr14_63974665_63975419
          Length = 755

 Score =  607 bits (314), Expect = e-178
 Identities = 344/354 (97%)
 Strand = Plus / Minus

                                                                       
Query: 2   tccatcagggagacccttctgcaggaagaggcccatctcaggggaggactgtctagagcg 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tccatcagggagacccttctgcaggaagaggcccatctcaggggaggactgtctagagcg 496

                                                                       
Query: 62  gaggccagcaggtagaaataagagacgtggatggtctgtgactcgtgttcgtcaatctcg 121
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 495 gaggccagcaggtagaaataagagatgtggatggtctgtgactcgtgttcgtcaatctcg 436

                                                                       
Query: 122 tgcctggtacccccacctcaaggcatctgtcctaacttccctaggaagtagaacttccac 181
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 435 tgcctggtacccccacctcaaggcatctgtcctaacttccctaggaagcagaacttccac 376

                                                                       
Query: 182 ctctacatttagccgacttaagggtctcaactatcatcaacaagaagttcatttaagatc 241
           |||| ||||||||||| |||| |||||| |||||||||||||||| ||||||||||||||
Sbjct: 375 ctctgcatttagccgatttaaaggtctccactatcatcaacaagacgttcatttaagatc 316

                                                                       
Query: 242 taaatggaagtctatacacatccctttgcttttatcatgcccccaatggactcctgccga 301
           |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 315 taaatggaagtctaaacacagccctttgcttttatcatgcccccaatggactcctgccga 256

                                                                 
Query: 302 tccttctaaacccagtccgattactcccccgtttatgtgccctgccctctgtga 355
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tccttcaaaacccagtccgattactcccccgtttatgtgccctgccctctgtga 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)