BAC Information

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BAC

Clone NameMSMg01-374M21
Chromosome14 (Build37)
Map Location 18,166,114 - 18,166,464
singlet/doubletsinglet
Overlap genenone
Upstream geneTop2b, Rarb, Tpi-rs9
Downstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374M21.T7 (MSMg01no374_m21.b1)MSMg01-374M21.TJ (MSMg01no374_m21.g1)
ACCAG480511AG480512
length788791
length of high quality
(start - end)
433 (52 - 484)352 (58 - 409)
definitionCHROMAT_FILE: MSMg01no374_m21.b1 PHD_FILE: MSMg01no374_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:10 2005CHROMAT_FILE: MSMg01no374_m21.g1 PHD_FILE: MSMg01no374_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCACCTGATGCATACCGAATGGCAGAGAAGTCCCTGAAA
AAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCT
GAGATTCCACCTCATACCAGTCAGAGTAGCTAAGGTAAAAAATTCAGGTG
ACAGCAGATACTGGCAAGAATGTGGAGAAAGAAGAACACTCCTCCATTGT
TGGTGGTATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGTT
CCTCAGAAAATTGGACATAGTACTACTGGAGGATCCAGCAATACCTCTCC
TGGGCATATATCCAGAAGATGTCCCAACAGGTAAGAAGGACACATGCTCC
ACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACC
CAGATGCCCCTCAACAGAGGAATGGATACAGAANACGTGGTACATCTACA
CAATGGAGTACTACTCAGCTATTAAAAAGAATGAGTTTATGAAATTTCTA
GCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTC
CTCAAGGAATCACCCCATATGTACTCCCTGATAATGGGATATTACCCCCA
ACCCAGGGATTTCCAGAAATAAGGGCCAATTTGGTTACCCTTGAACTCCC
AAAAAAGAAAAGGAGAGGGGGCCCTAGCCCCCCCTTAATATGGGAAAAAC
CCCCGGAGTGGTTTTCAAAAAAATTGGGTTGGGAAGAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCAAGGTTGGGTAAGGATTGGGAAGTCTGGGTGGGAGGTGTCTT
GCTAATGAGTGATTTAATTCTCAGAAAGTTTAATATCAGTGTCTCAGATA
GTGTCAGGAACTGCTTACCTCTGCTTGATAATGTATTTGCATAAACATTG
ACTCTATATTCTGTTTTGGAGTCTCTGGGAAGCATCACGGGTGCCACTAT
ATTCTTGGTCCCTTAGAGATGGGTCCCCATGTTTCTCCCCAGAGAGATTC
ATCGTTATCTCTTTATNAACTTAAAAATAACAAAACATGGCAAACAAAAA
CTGTTAACCATAGTAGTCTAGGAAAATGAAATATCTTGCTTAAGATTCTC
TAAGGGAAACTGTAGGCCCTTGAATAAAGGCTGCCTAAATCTCATGCCCA
TGGAAATTTGCCATACCAGGCTTAAATTTAAAGAAAAAAAAGAGGCGTTA
CTTTTTTCCCTGGTGTTTAAGCCACAAATGGTCGAAAAAGGGGTTTTTTG
GCCTTGTTGTGAAAAAATATTTTTTTTTTAATTTTTTCATTCGTNTTTTT
CATAAATTTTTTTTTGTTTTCTTAATTTTTTTAATGTTTTTTTTTATTTT
GATTGTTATATTATGTTGCCTTTTTATTCTTGTAATTATTTTTTATACTA
TATTTTATTTCTCGTTTTTTTTTGTTATATTTTTNTCTCTTTGTTTGGTT
TATCTTTTTTTTTTTTTTGATATTTAAATTTTGTTTTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_m21.g1 MSMg01no374_m21.g1 CHROMAT_FILE:
MSMg01no374_m21.g1 PHD_FILE: MSMg01no374_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:10 2005
         (352 letters)



>mm_chr14_18165914_18166664
          Length = 751

 Score =  636 bits (329), Expect = 0.0
 Identities = 346/352 (98%), Gaps = 1/352 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaggttgggtaaggattgggaagtctgggtgggaggtgtcttgctaatgagtgatttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 caaggttgggtaaggattgggaagtctgggtgggaggtgtcttgctaatgagtgatttaa 492

                                                                       
Query: 61  ttctcagaaagtttaatatcagtgtctcagatagtgtcaggaactgcttacctctgcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 491 ttctcagaaagtttaatatcagtgtctcagatagtgtcaggaactgcttacatctgcttg 432

                                                                       
Query: 121 ataatgtatttgcataaacattgactctatattctgttttggagtctctgggaagcatca 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ataatgtatttgtataaacattgactctatattctgttttggagtctctgggaagcatca 372

                                                                       
Query: 181 cgggtgccactatattcttggtcccttagagatgggtccccatgtttctccccagagaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cgggtgccactatattcttggtcccttagagatgggtccccatgtttctccccagagaga 312

                                                                       
Query: 241 ttcatcgttatctctttatnaacttaaaaataacaaaacatggcaaacaaaaactgttaa 300
           |||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 311 ttcatcattatctctttattaacttaaaaataacaaaacatg-caaacaaaaactgttaa 253

                                                               
Query: 301 ccatagtagtctaggaaaatgaaatatcttgcttaagattctctaagggaaa 352
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 252 ccatagtagtctaggaaaatgaaatatcttgcttaagattctctacgggaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 751
Length adjustment: 9
Effective length of query: 343
Effective length of database: 742
Effective search space:   254506
Effective search space used:   254506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)