BAC Information

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BAC

Clone NameMSMg01-375H23
Chromosome14 (Build37)
Map Location 114,404,813 - 114,572,176
singlet/doubletdoublet
Overlap genenone
Upstream geneTpm3-rs7, LOC100043510, LOC382947
Downstream geneLOC668791, LOC100043821, LOC100043521, Gpc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375H23.T7 (MSMg01no375_h23.b1)MSMg01-375H23.TJ (MSMg01no375_h23.g1)
ACCAG481036AG481037
length795821
length of high quality
(start - end)		470 (49 - 518)469 (77 - 545)
definitionCHROMAT_FILE: MSMg01no375_h23.b1 PHD_FILE: MSMg01no375_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:06 2005CHROMAT_FILE: MSMg01no375_h23.g1 PHD_FILE: MSMg01no375_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,571,712 - 114,572,176)(114,404,813 - 114,405,281)
sequence
NNNTTCAATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTAGCCATTCTTCACCAGGTACATGAGGAAATCATGTAGATA
ATTCAGCAATTAAACAAGGATGTTCTCATCTAGAGGTGTATAGGCTAAAA
TCATTCCAATTTGTACAAATGATCTCAGTAAAAGGCCCTCTATACACCTG
GGGCGTGGATGAATGGGATAATCTGCAAGAATTTCTACATACTGTGGTCT
CCCAAATTTGTAGTGTAGCTGAGTGCCCAACATAACATTGAAGCACCCCT
TTATCCCTAACAGCCTCAATAACATTACACTCCCTTTTATCTCTGTTTCC
TCAAGGTTTCTTATTATTTGCATAATCCTCAAAAATTGAATCTCCATTTC
TCTTGGCAAGAAGCTAGAAAAGCTGCTTTTGTCTGGTCATCCACAAGTCA
TGCTTTCAGATCTCCAGGAATCTTTAACTTCAATCTGTTCATGAATGGTT
CTTTACGTTCAAATTTANGGCCTACACTTTTCTTCCTNAGGAGCCGAGNT
GTCTCACTGGTTCTGCTCTGAACCTGTGGAGGTCACTGCCCTATTTCTCC
AGTGGATATTATTTTCATTGTGGAACTTCCCTACTGGAGCTAAAAAACAG
TTTTTTTTCTATTTTTACCCAAAGTCCCCCCAACCAAAAAACTCCTTTTT
GGGTTGTGCCCACAACTTTTGGGAAGGGAACCTAAAAAATATTCTTGGTT
TTTCTGAGCGGCTTTTTGTTAAAAAATAAATATCCCTTTCTTATG

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATCTAGGTAAAGAAAGTCTAAGAT
GAAAGGATTCCCTTCTTCAGAAAAGGATAATGGGCCCTACATGGAAAGAG
TTCCTTCTTCAGGCACAACAAATAAAAGGTGCGACACATGTCCAAGTAAG
CCAGGCTGCATTTTGAACTAGAAGCAGAACTTACTGTTGTAAATGTTGTG
GCTCTGAAGGCACCAGGCATTCATGTGATTTACATATACCTGTTGGCAAA
AATCCAATTAAAAAATGGAGTGTGGAATGAATGGGTCCGCCCTGAGCTTT
TAAATTTTCAGCCTTCTTTCAGTGACATACCTCCTCCATCAATGCTACAG
TTACTCCAACAAGGCCTATCTCTGTGGTCTCCAACCTGATGATCAAATGG
CCCTTAAAAAGGAGTTGCATAAGACCAATTGGAAAATGTAGATATTTAGA
TTATGATTCATAGCAGTAGCAAAATTAGNTATTAAGTAGTCACAAAAATA
ATTTCATGTGTGGGTATCACCCACACATGAGAAACTACATTAAAGGGGTC
ACAGCATTTAGGACAGTTGGAAACTACTGAACTAATCCCTTCCTAAACCA
TTTCATCAAAGGGCAGGCCCTAACATGGAAAAACCTTTTTAAAAAGACAA
AACAAGGCTAAGGAAACTTTTCTGAGGAAATTTTTAAGAACAACTCTTTT
CGGTTTATTTTTTAAAAAAAAAAAAAATTGGTGAAAGAGAACCGCCCGCA
ACCATAAAAAATCATCCATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_h23.b1 MSMg01no375_h23.b1 CHROMAT_FILE:
MSMg01no375_h23.b1 PHD_FILE: MSMg01no375_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:06 2005
         (470 letters)



>mm_chr14_114571508_114572377
          Length = 870

 Score =  806 bits (417), Expect = 0.0
 Identities = 453/465 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctagccattcttcaccaggtacatgaggaaatcatgtagataattcagcaatta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gaattcctagccattcttcaccaggtacatgaggaaatcatgtagataattcagcaatta 610

                                                                       
Query: 65  aacaaggatgttctcatctagaggtgtataggctaaaatcattccaatttgtacaaatga 124
           ||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 609 aacaaggatcttctcatctagagttgtataggctaaaatcattccaatttgcacaaatga 550

                                                                       
Query: 125 tctcagtaaaaggccctctatacacctggggcgtggatgaatgggataatctgcaagaat 184
           |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 549 tctcagtaaaaggccctctatacacctggggcatggataaatgggataatctgcaagaat 490

                                                                       
Query: 185 ttctacatactgtggtctcccaaatttgtagtgtagctgagtgcccaacataacattgaa 244
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ttctgcatactgtggtctcccaaatttgtagtgtagctgagtgcccaacataacattgaa 430

                                                                       
Query: 245 gcacccctttatccctaacagcctcaataacattacactcccttttatctctgtttcctc 304
           |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 429 gcactcctttatccctaacagcttcaataacattacactcccttttatctctgtttcctc 370

                                                                       
Query: 305 aaggtttcttattatttgcataatcctcaaaaattgaatctccatttctcttggcaagaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaggtttcttattatttgcataatcctcaaaaattgaatctccatttctcttggcaagaa 310

                                                                       
Query: 365 gctagaaaagctgcttttgtctggtcatccacaagtcatgctttcagatctccaggaatc 424
           |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 309 gctagaaaagctgcttttgtctggtcattcacaagtaatgctttcagatctccaggaatc 250

                                                        
Query: 425 tttaacttcaatctgttcatgaatggttctttacgttcaaattta 469
           ||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 249 tttaacttctatctgttcatgaatgtttctttacgttcaaattta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no375_h23.g1 MSMg01no375_h23.g1 CHROMAT_FILE:
MSMg01no375_h23.g1 PHD_FILE: MSMg01no375_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:06 2005
         (469 letters)



>mm_chr14_114404613_114405481
          Length = 869

 Score =  893 bits (462), Expect = 0.0
 Identities = 467/469 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctaggtaaagaaagtctaagatgaaaggattcccttcttcagaaaaggataatgggcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctaggtaaagaaagtctaagatgaaaggattcccttcttcagaaaaggataatgggcc 260

                                                                       
Query: 61  ctacatggaaagagttccttcttcaggcacaacaaataaaaggtgcgacacatgtccaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctacatggaaagagttccttcttcaggcacaacaaataaaaggtgcgacacatgtccaag 320

                                                                       
Query: 121 taagccaggctgcattttgaactagaagcagaacttactgttgtaaatgttgtggctctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagccaggctgcattttgaactagaagcagaacttactgttgtaaatgttgtggctctg 380

                                                                       
Query: 181 aaggcaccaggcattcatgtgatttacatatacctgttggcaaaaatccaattaaaaaat 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggcaccaggcattcatgtggtttacatatacctgttggcaaaaatccaattaaaaaat 440

                                                                       
Query: 241 ggagtgtggaatgaatgggtccgccctgagcttttaaattttcagccttctttcagtgac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagtgtggaatgaatgggtccgccctgagcttttaaattttcagccttctttcagtgac 500

                                                                       
Query: 301 atacctcctccatcaatgctacagttactccaacaaggcctatctctgtggtctccaacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atacctcctccatcaatgctacagttactccaacaaggcctatctctgtggtctccaacc 560

                                                                       
Query: 361 tgatgatcaaatggcccttaaaaaggagttgcataagaccaattggaaaatgtagatatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgatgatcaaatggcccttaaaaaggagttgcataagaccaattggaaaatgtagatatt 620

                                                            
Query: 421 tagattatgattcatagcagtagcaaaattagntattaagtagtcacaa 469
           |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 tagattatgattcatagcagtagcaaaattagttattaagtagtcacaa 669


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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