BAC Information

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BAC

Clone NameMSMg01-376D18
Chromosome14 (Build37)
Map Location 11,349,115 - 11,349,383
singlet/doubletsinglet
Overlap geneFhit
Upstream geneLOC100042415
Downstream geneLOC100041974, LOC667030, EG382843, LOC100042427, LOC667059
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376D18.T7 (MSMg01no376_d18.b1)MSMg01-376D18.TJ (MSMg01no376_d18.g1)
ACCAG481598AG481599
length583699
length of high quality
(start - end)		200 (63 - 262)269 (75 - 343)
definitionCHROMAT_FILE: MSMg01no376_d18.b1 PHD_FILE: MSMg01no376_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:05 2005CHROMAT_FILE: MSMg01no376_d18.g1 PHD_FILE: MSMg01no376_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTTTCNNNNNNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCGCGGAATTCTTTGTTTATCTCTGCACCCCATTTTTAA
TGGGGTTATTTGATTTTTTGGAGTCCACCTTCTTGAGTTCTTTATATATA
TTGGATATTAGCCCCCTATTTGATTTAGGACAGGTAAAAATCCTTTCCCA
ATCTGTTGGTGGCCTTACAGGCTGAGAAAGAATTTAGGGAAACAACACCC
TTCTCAATAGTCACAAATAACATAAAATACCTTGGGCGTGACTCNTACTA
AGGAAGTGAAAGATCTATACGATAAGAACTTCCAGTCTCTGAAGAAAGGA
ATTTAAAGAAAGATCTCCAAAAAATGGAAAGGATTTTCCCATTGGTCATT
TGGGCGGGATTCCATTATTGTGAAAAAATGGGGGTTTTTTTTTTGGCCCA
AAAGAGACAATTCCCTACAAAATTTTTTTGGGGGGGGTTCCCCCCCCCCC
TCAAAAAAATTTCTCCCCCCCCCCCCCTATTTTCTTTCTTCTCTAGGGGG
GGGGTTTTTTAAAAAAAAAAGGAGGGCGGGGCC

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATCCTTTTTTAAGTAGGGGGTAATAG
GACACAAGACCACAAACTGCTATTCTATTACTGTTACTGTCATTTGGGTC
ACTATTCTCCTTCACAGGAAATAAAATAAAAATCTGTGAAAAGTGTTTTA
AACCAGTGCAATCTTCTGGAGGCGGATTTATGCCTTTCCAGTCTGTGATC
CAAAGGTCACAGTACTGAATTTACCAAATTTCATTAGTTTCAAGATAACA
TGAATTATAAAATATACTAATAATTTAATGAGTTATTAGGAAAAATTNAA
AGCTCTACATTAAGTATGCACATTGCTGAAAAAGAGCTCTCATTTATAGA
ACATTANAATGTGAGAAGAATGATAATTCTGTGATTTAAAATTCACTTAC
TTTCATTAACTGAGAAATATCTTGGTTCCCTAGGGGTTTACCCCTTAAAC
ATCCCAAAAATAAATGGGGGGGGGTTAAAAAACAAACCCCCCCTTGGGGG
GCGCCCCCCCCATTTTTTNNAAAACCGCCNTCAATAAAAAAAAAAAAGAT
TTTTTTTTTGGGGGGTTTTTTTTTTTTTANNNANACAAANNNANNNATTT
TTTTTTTTTTTTTTTTTTTATGGGGGGGGGGGGGGGAGGGAGAAAAANN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_d18.g1 MSMg01no376_d18.g1 CHROMAT_FILE:
MSMg01no376_d18.g1 PHD_FILE: MSMg01no376_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:05 2005
         (269 letters)



>mm_chr14_11348915_11349583
          Length = 669

 Score =  520 bits (269), Expect = e-152
 Identities = 269/269 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atccttttttaagtagggggtaataggacacaagaccacaaactgctattctattactgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 atccttttttaagtagggggtaataggacacaagaccacaaactgctattctattactgt 410

                                                                       
Query: 61  tactgtcatttgggtcactattctccttcacaggaaataaaataaaaatctgtgaaaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tactgtcatttgggtcactattctccttcacaggaaataaaataaaaatctgtgaaaagt 350

                                                                       
Query: 121 gttttaaaccagtgcaatcttctggaggcggatttatgcctttccagtctgtgatccaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gttttaaaccagtgcaatcttctggaggcggatttatgcctttccagtctgtgatccaaa 290

                                                                       
Query: 181 ggtcacagtactgaatttaccaaatttcattagtttcaagataacatgaattataaaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ggtcacagtactgaatttaccaaatttcattagtttcaagataacatgaattataaaata 230

                                        
Query: 241 tactaataatttaatgagttattaggaaa 269
           |||||||||||||||||||||||||||||
Sbjct: 229 tactaataatttaatgagttattaggaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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