BAC Information

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BAC

Clone NameMSMg01-377A04
Chromosome14 (Build37)
Map Location 51,103,252 - 51,103,556
singlet/doubletsinglet
Overlap geneOlfr741
Upstream geneSlc35f4, 3632451O06Rik, LOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740
Downstream geneGA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b, Pnp, LOC667034, LOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377A04.T7 (MSMg01no377_a04.b1)MSMg01-377A04.TJ (MSMg01no377_a04.g1)
ACCAG482192AG482193
length738737
length of high quality
(start - end)
519 (76 - 594)439 (83 - 521)
definitionCHROMAT_FILE: MSMg01no377_a04.b1 PHD_FILE: MSMg01no377_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:03 2005CHROMAT_FILE: MSMg01no377_a04.g1 PHD_FILE: MSMg01no377_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:03 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NTTCCTCTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTATCATACTTCCAAAGAATGCCCAATACCAATACTCTT
CAAACTATTCCACAAAATAGAAACAGAAGATACACTACCCAATTCACTCT
ATGAGGTGACAATTACACTTATTCCGAAAACATACAAAGATCCAACAAAA
GAGAACTTCAGACCAATTTCCCTTATGAATGTTGATGCAAAAATACTCAA
TAAAATTCGCACAAAAATAGTCACAAATAATATAAAATACCTTGGTGTGA
CTCTAACCAAGCAAGTGGAAAATCTGTATGATAAGAACTTCAAGTCTCTG
AAGAAAAGATTCAAAGATCTCAGAAGATGGAAATACCTCCCATGCTCAAG
GTTTGGTAGGATTAATATAGTAAAAATGGCCATCTTGCTGAAACCAATCT
ACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCATAGAA
TTAGACAGAGCAATTCTCAAATTCATTTGGAATAACAAAAAACCCACGAG
AGCAAAAAGCTATTCTCAACAATAAAAGAACTTCTGGGGGAATCTCCATC
CCTGACCTTAAGCTGGATTACAGAACAATATTGATTAAAATCCGCCCGGG
AATGGTATAGAGAAAGGCCGGTCCGATCATAAAATATAACTGGAAAATGC
CAAAAGAATCCTCCCCCCCATGGCCACCTGATCTTTGG
NCCCCCACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCTATTTAACAACAAAA
GCCAAGATAACAGTCATACACATACAGACAAATCATTGTCTGTATTTGTA
GTTTAACTTAGAGAAATGATAATTTAAAAAAATCAACTCTTCTTTCATTT
AGGACCATGCCTCCCATTGGATCCACTAATTATTTTATTCCTCCTTGTAA
GTGGATTGAAGCATCCATGATTTGGCTTTACTTCCTGTTAAGCTTCATAC
TGTGTATGAGTTGCATTGTGTGTATAATGAGGTTTTTGGATAATGGCTAT
TTGTCAGTGAGCATATACCCTAAATGTTTTTTTGGGTCTGGGTTACCACA
CTCAGAATGATATTTTCTAATTTCATCCATTTGTCTGCAAAATTCATGAT
GTCTTCATTTTTAATAGCTGACTAGTATTCCATTGAGCAAATGTACCACA
TTTTCTGTATTCATTCTTCAGCTGAGGGGTATCTGGGTTCTTTGCAGCCG
CTGGCTATTATAACCAGGCTGGCACGAACAATGTAGCACCTGTTCCTGTG
ACTTGGTGTAATATCTTTCGGGATCATGTTATAAAAAAATAGATTGGTTC
TCCTCAATAATCACTTCCTATTCCTTGAATTCCGCCCTTCTACACCCCCA
GCACGCCCCCGCTTAAATTTATATTCCTCCCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_a04.g1 MSMg01no377_a04.g1 CHROMAT_FILE:
MSMg01no377_a04.g1 PHD_FILE: MSMg01no377_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:03 2005
         (439 letters)



>mm_chr14_51103252_51104091
          Length = 840

 Score =  495 bits (256), Expect = e-144
 Identities = 295/310 (95%), Gaps = 7/310 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctatttaacaacaaaagccaagataacagtcatacacatacagacaaatcattgtctg 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 305 agctatttaacaacaaaagccaagataacagtcatgcacatacagacaaatcattgtctg 246

                                                                       
Query: 61  tatttgtagtttaacttagagaaatgataattt-aaaaaaatcaactcttctttcattta 119
           |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 245 tatttgtagtttaacttagaaaaatgataatttaaaaaaaatcaactcttctttcattta 186

                                                                       
Query: 120 ggaccatgcctcccattggatccactaattattttattcctccttgtaagtggattgaag 179
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 185 ggaccatgcctcccattggatccactaattattttatttctccttgtaagtggattgaag 126

                                                                       
Query: 180 catccatgatttggctttacttcctgttaagcttcatactgtgtatgagttgcattgtgt 239
           ||||||||||||| |    |||| |||||||||||||||||||| |||||||||||||||
Sbjct: 125 catccatgatttgtc----cttcttgttaagcttcatactgtgtctgagttgcattgtgt 70

                                                                       
Query: 240 gtat-aatgaggtttttggataatggctatttgtcagtgagcatataccctaaatgtttt 298
           | || |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 69  g-attaatgaggtttttggataatggctatttgtcagtgagtatataccctaaatgttct 11

                     
Query: 299 tttgggtctg 308
           ||||||||||
Sbjct: 10  tttgggtctg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 840
Length adjustment: 9
Effective length of query: 430
Effective length of database: 831
Effective search space:   357330
Effective search space used:   357330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)