BAC Information

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BAC

Clone NameMSMg01-377D05
Chromosome14 (Build37)
Map Location 11,332,448 - 11,332,764
singlet/doubletsinglet
Overlap geneFhit
Upstream geneLOC100042415
Downstream geneLOC100041974, LOC667030, EG382843, LOC100042427, LOC667059
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377D05.T7 (MSMg01no377_d05.b1)MSMg01-377D05.TJ (MSMg01no377_d05.g1)
ACCAG482338AG482339
length770765
length of high quality
(start - end)		463 (54 - 516)465 (80 - 544)
definitionCHROMAT_FILE: MSMg01no377_d05.b1 PHD_FILE: MSMg01no377_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:18 2005CHROMAT_FILE: MSMg01no377_d05.g1 PHD_FILE: MSMg01no377_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAAGAATACCTCAAAGACATCATCCAAAATGATCAATT
AGGTTTCATTCCACGGATACAGGGGTGGTTCAATATATGAAAATCCATCA
ATGTAATCTACCATATAAACAAACTGAAAGATAAAAACCACATGATCATC
TCACTAGATGCTGAAAACACATTTAACATAATCCAACACCCCTTCATAAA
GAAAGTCTTGGAGAGAGCAGGGCTAGAAGGTGCATAATTAAACACAATAA
AGGCAACATACAGCAAGCCAATAACCAACAGCAAATTAAATTGAGCGAAA
TTTAAAGCATTTCCACTAAAATCAGGGACAACACAAGGTTGTCCACTATA
CCACCACCCCACCCACATCTAATCAATATACTTAAAGTTCTTCTAACTAG
AGCAAGAAGACAATTAAAGATCAAGGGGATACAAATTGGAAAGAAGGAAG
TCAAAGAACTGTTATTTGTAGATAATATAGTATACATAAGTGACCCCAAA
AAATCCCTACCAGAGAATTCCTACAGCTGATAAATATCTTCAGCCAAATG
ACTGGATACCAATTTAACTAACTTAAATCTCGAGCCTCTCTCTTAACCAG
CCTTTAAAAAGGTTGAAAAAAAAATAAGGAAAAAGAAACCCTCTGTTGTA
CCCCGAATTAAAAAAATAACTTTGGGGGGATCTTTCCCCTCCTATTTGAA
AACTTTTCGCAATTAATTTN

TTTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTAGTAGACCAGGCTGGCC
TCAAATCCAGAAGTCTATGGCCTGTCAAGCCTCTTGTTCCTGATCATCCA
GGCAGTGTTAAACATGGGCTACCTCTCATGGCATGGGCCTCAAATTAGAC
CCATCACTGATTAGCCACTGCCATGAGTTCTGTGCAAAAGGAGCCATTCT
TGAGAGCAATACTCGTAGCTTGCATCATCTCTTCCTGACACCAACAAACC
ATGTACACTTCTGACAGTATCTAGAAACACAATTGATATTGTTTCTGGCA
TCTGGAGACCCTAAGCATCTTATATAAAATACCTGGGACAAACTTCTACA
ATTTCTACAGAAAAGAATTATCTGGGTCAAAGGTCAGTAAAGCTGAGGTC
AAGCATCCTTGTGGTCAGAGAGGTGTTTAGATGGCAAGGTGTTTGCTATG
GTTTTCAGTTAACAGGAAATTCTTCTCAATCTAGAAACGGACTAGAGGGT
CTGTTCCTCCTCTTAATATAGNACTCTTTTACCATTTTTCTTTTAAACCA
AAGAATTGAACACTTTAATTTCCCTGCAGCGTATTCAAGAAGAAAATGCC
TTACCCCTGCTTCCCCCCAAGGGTTTGTTTACAAAAAGCCTTATAATTTC
TTCCCCTTTACTGATAAATTTTGCCTCTCAACCTCCATAGTGGTTTTTTT
AATTAATACACCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_d05.g1 MSMg01no377_d05.g1 CHROMAT_FILE:
MSMg01no377_d05.g1 PHD_FILE: MSMg01no377_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:18 2005
         (465 letters)



>mm_chr14_11332284_11333148
          Length = 865

 Score =  563 bits (291), Expect = e-164
 Identities = 307/317 (96%), Gaps = 8/317 (2%)
 Strand = Plus / Minus

                                                                       
Query: 157 aaaaggagccattcttgagagcaatactcgtagcttgcatcatctcttcctgacaccaac 216
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaaaggagccattcttgagagcaatactcgtagcttgcatcatctcttcctgacaccaac 422

                                                                       
Query: 217 aaaccatgtacacttctgacagtatctagaaacacaattgatattgtttctggcatctgg 276
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aaaccaagtacacttctgacagtatctagaaacacaattgatattgtttctggcatctgg 362

                                                                       
Query: 277 agaccctaagcatcttatataaaatacctgggacaaacttctacaatttctacagaaaag 336
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agaccctaagcatcttatataaaatacctgggacaaacttctacaatttctacagaaaag 302

                                                                       
Query: 337 aattatctgggtcaaaggtcagtaaagctgaggtcaagcatccttgtggtcagagaggtg 396
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 301 aattatctgggtcaaaggtcagtaaagctgaggccaagcatccttgtggtcagagaggtg 242

                                                                       
Query: 397 tttagatggca--------aggtgtttgctatggttttcagttaacaggaaattcttctc 448
           |||||||||||        |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tttagatggcaagcatggtaggtgtttgctatggttttcagttaacaggaaattcttctc 182

                            
Query: 449 aatctagaaacggacta 465
           |||||||||||||||||
Sbjct: 181 aatctagaaacggacta 165


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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