BAC Information

Click to search

BAC

Clone NameMSMg01-377E16
Chromosome14 (Build37)
Map Location 109,841,390 - 109,983,022
singlet/doubletdoublet
Overlap geneLOC640892
Upstream geneEG668761, Slitrk1
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377E16.T7 (MSMg01no377_e16.b1)MSMg01-377E16.TJ (MSMg01no377_e16.g1)
ACCAG482408AG482409
length775781
length of high quality
(start - end)		466 (48 - 513)437 (76 - 512)
definitionCHROMAT_FILE: MSMg01no377_e16.b1 PHD_FILE: MSMg01no377_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:25 2005CHROMAT_FILE: MSMg01no377_e16.g1 PHD_FILE: MSMg01no377_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,982,560 - 109,983,022)(109,841,390 - 109,841,826)
sequence
NTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTTGGCTGATTTTCACACTTAGAATTAACTGCAATTTGTAACA
AATCCCTGAAAATGGGGAGATTATAAAGTGCACATAAAAAGGCAAAATTG
TCACACGTGAGAATTTCTGCCATATATTCACGCATCTCATGTAAGAAGCA
GCTTAGATGCTGATGGTGTTTGAAAGACTCTTGGACACATAACTTCCAAA
GCTGGCTAGAACGATATTCTTTGCTGGTGCTTTGAAATTCAATAATAAAT
CCTTGCACCGTGCTCAGATGGACTGTTCCTGTAATGCCCTATGAAATGCA
TGGCACATCATTTGTTAGATCTAGTTAACTATGATTCATAAAATGTGACA
TTTCTCATGCCATTTGCAAGGCAGTTAATTTATCCAGAAAATCTCATGAT
ATCCTCTACACTTGAAAAGGTTTACTGTTTAGTAATAAAAAGAGAAATGT
TTTTTAAAGAGATAGAAGTGATGTAACTGTACAATGTGGTAAATTCAAGA
TTGCGCAATACACTGCAAAGTACACCATGCGTGGAGTGCTGACATATTAT
ATTCCTGCCCACATGGTGTCAAAACCGGAATAATAAAACTTGCTATCCCC
CTGTTTCGATGTTTTCACTCCCCAAAGCTTACCTTTTTATTTCTCAAAAT
TTATTTAATAGCCTTTTTTCGCCCCTCTTTTTCCTCCCAATTCATATCGT
CCTCTTTCCCCCCCCTCCCACCCCN

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAAATCCTTTTGATTCCCACTTTTC
AGATTTAGATGCACAGTTAATAAATATTATAACTGGAAAATAAAGATTTA
CTTGCAAAAAACATACAATTTATTTCTAAAAGAAATATTTTAAAAAGAAA
ATAAAATTGAAAAGATATTTCTGTAAAAATGTATTTCTGTAACTTTTTTG
AGATTAAATAGTTTCATAAATCTTAGTCAGGACACTCAATGGGTGTCAAC
CAAGAACATATTTTTGCCTAATGATTAAATCACCCTATCTAAAATTGGGT
ATCTTGGAAAAATATGTCAAATACAGATCTGAAAATTCACCTGCAAGTCT
TTCAAGAGAAAGAGAAAAAACACATATAGCAGATAGCTTTACAAATTGCA
CAGCTGCACAAGCACAGCATTTTGGTATTTGCTGAATGAAACTGTANGGA
GAAATACTGCATTTTGAGATATGTATGTATATATGTATGTATGTATGNAC
CTACCCCTCCCCCACTATTTCTTGTCTTTTAACATTCTTACCTCCCAAAA
ATTTCACACCCACCATTAAAAACTTTTTTTTTCATTAATTTCTCTCCCCC
CCTCTCCTTTTTTTTAATCCCCCACTTCTTCCTCCCCTTACTTTTCCCCT
CGCAACTTCCCTTATTTTTCCACTCTAATTACCCCACTATAAAACATATC
CCTTTCATCTCTTTTCTCTCTCCCCTTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_e16.b1 MSMg01no377_e16.b1 CHROMAT_FILE:
MSMg01no377_e16.b1 PHD_FILE: MSMg01no377_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:25 2005
         (466 letters)



>mm_chr14_109982357_109983222
          Length = 866

 Score =  849 bits (439), Expect = 0.0
 Identities = 457/463 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccttggctgattttcacacttagaattaactgcaatttgtaacaaatccctgaa 63
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ggaactccttggctgattttcacacttagaattaactgcaatttgtaacaaatccctgaa 607

                                                                       
Query: 64  aatggggagattataaagtgcacataaaaaggcaaaattgtcacacgtgagaatttctgc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 aatggggagattataaagtgcacataaaaaggcaaaattgtcacacgtgagaatttctgc 547

                                                                       
Query: 124 catatattcacgcatctcatgtaagaagcagcttagatgctgatggtgtttgaaagactc 183
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 546 catatattcacgcatctcatgtaagaagcagcttagatgctgatggcgtttgaaagactc 487

                                                                       
Query: 184 ttggacacataacttccaaagctggctagaacgatattctttgctggtgctttgaaattc 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 486 ttggacacataacttccaaagctggctagaacgatattctttgctggtgctttgaatttc 427

                                                                       
Query: 244 aataataaatccttgcaccgtgctcagatggactgttcctgtaatgccctatgaaatgca 303
           |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 426 aataataaatccttgcaccgcgctcagatggactgttcctgtaatgccttatgaaatgca 367

                                                                       
Query: 304 tggcacatcatttgttagatctagttaactatgattcataaaatgtgacatttctcatgc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tggcacatcatttgttagatctagttaactatgattcataaaatgtgacatttctcatgc 307

                                                                       
Query: 364 catttgcaaggcagttaatttatccagaaaatctcatgatatcctctacacttgaaaagg 423
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 306 catttgcaaggcagttaatttatccagcaaatctcatgatatcctctacacttgaaaagg 247

                                                      
Query: 424 tttactgtttagtaataaaaagagaaatgttttttaaagagat 466
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttactgtttagtaataaaaagagaaatgttttttaaagagat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no377_e16.g1 MSMg01no377_e16.g1 CHROMAT_FILE:
MSMg01no377_e16.g1 PHD_FILE: MSMg01no377_e16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:25 2005
         (437 letters)



>mm_chr14_109841190_109842026
          Length = 837

 Score =  785 bits (406), Expect = 0.0
 Identities = 429/437 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaatccttttgattcccacttttcagatttagatgcacagttaataaatattataactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaatccttttgattcccacttttcagatttagatgcacagttaataaatattataactg 260

                                                                       
Query: 61  gaaaataaagatttacttgcaaaaaacatacaatttatttctaaaagaaatattttaaaa 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaataaagatttacttgcacaaaacatacaatttatttctaaaagaaatattttaaaa 320

                                                                       
Query: 121 agaaaataaaattgaaaagatatttctgtaaaaatgtatttctgtaacttttttgagatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaaataaaattgaaaagatatttctgtaaaaatgtatttctgtaacttttttgagatt 380

                                                                       
Query: 181 aaatagtttcataaatcttagtcaggacactcaatgggtgtcaaccaagaacatattttt 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatagtttcataaatcttaatcaggacactcaatgggtgtcaaccaagaacatattttt 440

                                                                       
Query: 241 gcctaatgattaaatcaccctatctaaaattgggtatcttggaaaaatatgtcaaataca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcctaatgattaaatcaccctatctaaaattgggtatcttggaaaaatatgtcaaataca 500

                                                                       
Query: 301 gatctgaaaattcacctgcaagtctttcaagagaaagagaaaaaacacatatagcagata 360
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 501 gatctgaaaattcacctgcaagtctttcaagagaaagagaaaaatcacatatagcacata 560

                                                                       
Query: 361 gctttacaaattgcacagctgcacaagcacagcattttggtatttgctgaatgaaactgt 420
           |||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||
Sbjct: 561 gctttacaaattgcacagctgcacaagcacagcattttgggatgtgctgagtgaaactgt 620

                            
Query: 421 anggagaaatactgcat 437
           | |||||||||||||||
Sbjct: 621 agggagaaatactgcat 637


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |