Query= MSMg01no378_m04.b1 MSMg01no378_m04.b1 CHROMAT_FILE:
MSMg01no378_m04.b1 PHD_FILE: MSMg01no378_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:19 2005
(503 letters)
>mm_chr14_36626586_36627488
Length = 903
Score = 949 bits (491), Expect = 0.0
Identities = 500/503 (99%)
Strand = Plus / Plus
Query: 1 ggaacagggaggtctaaattcagacaatcaatctttgaagagaccaagtccacttgataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaacagggaggtctaaattcagacaatcaatctttgaagagaccaagtccacttgataa 260
Query: 61 tttagaaattataaatatgtgaacatcttacaaggaaaagggaatccttagtccccaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttagaaattataaatatgtgaacatcttacaaggaaaagggaatccttagtccccaagc 320
Query: 121 atctaggagttgaacatgttaccaagaatcgcagccataaaacttctatagctgcctata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctaggagttgaacatgttaccaagaatcgcagccataaaacttctatagctgcctata 380
Query: 181 gaaacacaggtaggactcaggtagagggcctgccctgctaatctttcaaaatttaactgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaacacaggtaggactcaggtagagggcctgccctgctaatctttcaaaatttaactgt 440
Query: 241 gctagagaagcagtgtacaactaaaaatcactgttgacccagggttaaatacattgactg 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctagagaagcagtggacaactaaaaatcactgttgacccagggttaaatacattgactg 500
Query: 301 ttaggcagacaggttggaagaatagctgttatagttaacaaaaatggtggacttcccaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaggcagacaggttggaagaatagctgttatagttaacaaaaatggtggacttcccaaa 560
Query: 361 atatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccaga 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atattactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccaga 620
Query: 421 gaactcctaagcctgataaacagcttcaatgaagtagctggatataaaattaactcaaac 480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 gaactcctaagcctgataaacagcttcaatgaagtagctggatataaaataaactcaaac 680
Query: 481 aagtcaatggcctttctgtacac 503
|||||||||||||||||||||||
Sbjct: 681 aagtcaatggcctttctgtacac 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no378_m04.g1 MSMg01no378_m04.g1 CHROMAT_FILE:
MSMg01no378_m04.g1 PHD_FILE: MSMg01no378_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:19 2005
(564 letters)
>mm_chr14_36752225_36753188
Length = 964
Score = 1054 bits (545), Expect = 0.0
Identities = 560/565 (99%), Gaps = 1/565 (0%)
Strand = Plus / Minus
Query: 1 aactggccctacattttttggttagtagaagacttttaattactgcattgttttcattag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 aactggccctacattttttggttagtagaagacttttaattactgcattgttttcattag 690
Query: 61 gagctaagggtctatttaaattgctcatttgattttgattttactttagtaatggacaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gagctaagggtctatttaaattgctcatttgattttgattttactttagtaatggacaaa 630
Query: 121 ggggtaggaaagaacaatcagagattgtcttctgggtttaggagtgataaatagagagac 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 cgggtaggaaagaacaatcagagattgtcttctgggtttaggagtgataaatagagagac 570
Query: 181 agctaggaatagattgacaagaacacaaacatcactgttcaaagctaggataaagagaaa 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 agctaggaatagattgaaaagaacacaaacatcactgttcaaagctaggataaagagaaa 510
Query: 241 atcaaactattatgataagaaagtacatgtaaagctaagtacagagatgcaaagacaaaa 300
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 atcaaacaataatgataagaaagtacatgtaaagctaagtacagagatgcaaagacaaaa 450
Query: 301 ctgagggcaggtttcctgttatttttaaaactataaagcattgagactcttaaataataa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ctgagggcaggtttcctgttatttttaaaactataaagcattgagactcttaaataataa 390
Query: 361 ttctatgacttttaatttaacaaaactttttcaagtaaatgaaaagcagagcttctcttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ttctatgacttttaatttaacaaaactttttcaagtaaatgaaaagcagagcttctcttc 330
Query: 421 acatgcaaaacattgctttaccagcaggcctctgcaccaaaggatattaaagaaagtctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 acatgcaaaacattgctttaccagcaggcctctgcaccaaaggatattaaagaaagtctg 270
Query: 481 taagacaaaaagcccaggacatctgactaaaatacagatttttttt-aaaggataaatat 539
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 269 taagacaaaaagcccaggacatctgactaaaatacagatttttttttaaaggataaatat 210
Query: 540 aatcagaaatggttaatgtgttaat 564
|||||||||||||||||||||||||
Sbjct: 209 aatcagaaatggttaatgtgttaat 185
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
