BAC Information

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BAC

Clone NameMSMg01-380G07
Chromosome14 (Build37)
Map Location 111,917,167 - 111,917,742
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501, EG223186
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380G07.T7 (MSMg01no380_g07.b1)MSMg01-380G07.TJ (MSMg01no380_g07.g1)
ACCAG484779AG484780
length761763
length of high quality
(start - end)
588 (33 - 620)576 (64 - 639)
definitionCHROMAT_FILE: MSMg01no380_g07.b1 PHD_FILE: MSMg01no380_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:27 2005CHROMAT_FILE: MSMg01no380_g07.g1 PHD_FILE: MSMg01no380_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTGGTGT
ACTTTTTAGGGCCACTTATATATACTATCATATCATCTGCAAATAGAGAT
ATTTTTACTTCTTCCTTTCCAATTTGTATCCCTTTGACCTCTTTTGTTGT
CCAATTGCTCTGGCTAGGACAGCAAGTACTATATTGAATATGTAGGGAGA
AAGTGGGCAGCCTTGTCTAGTCCCTGGTTTTAGTGGGATTGCTTCCATTT
TTTCCATTTACTTTGATGTTGGCTACTAGTTTTCTGTAGATTGCTCTTAT
CATGTTTAGGTATGGGCCTTGAATTCCTGATCTTTCCAAGACTTTTATTA
TGAATGGGTGTTGGATTTTGTCAAATGCTTTCTCAGCATCTAATGAGATG
ATCATGTGTTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACATTGAT
GGATTTCCATATATTAAACCATCCCTGCATTACTTGGATGAAGCCTACTT
GGTCATGATGGATGATCATTTTGATGTGTTCTTGCATTCGGATAGTATGA
ATTTTATTGAGTATTTTTGGTGTGTCTTTATGTGGTTTAGGTATCAGAGT
AATTGTGGCTTTGTAAGAATTAATTGTGTAGAGTACCTACTGTTTCTATT
TTGTGGAATAGTTTGAGAAGAACTGGAATTGGGTTTTCTTTGAAGGTTTG
ATAGAACTGTGCCATAAACCCCTCTGGTCCTGGGCTTTTTTTTTATTTTT
CCTTTTTCGCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXACTGGAAGTCTTGTTGAGGCAAGCATTTCTTTTCATT
GTCCCTAACTGATTTTATGCAGACTTAAGGATACAGATAGGGAAGGGACA
TCATATGTGTGTGTCCTTCAACTCCTTTAGAAAATCAACAAAGTAATATA
GGTATGGATTATTTTGACATTTAAAGCAAATAGATTAAGGGAAATAAAAC
AAATATATCATATTGACAAATATTGGTAGATTTAGAATTATAAATATTTA
TTTTCTAAATAACTAAACCCGTCCAAGAAATTAGAAGAATTTCTACTGGT
TTGAGATCAACCTGTGATTTCCAGTGAGATTTAAGCCAGTCATAAAGTAA
GCCTGTGTATCACTAATAAACAGAAAATTGTTTCTCTTTATAGCTTTTAT
ATTTTGGTAGAGTCAGATTTTGTTCACCATCACAAACACCTTCATGGAAT
GACTTAAGATAGGGAAGGTATTTCACTCTTGTCTTCAGTCATTCAAGATA
GACAAGGCCCATTGCAGAACAGCCACCCAGATGAGTAGATTTAAAACATA
ATCACACATTCATGGTCAGATTCTATCATATAAAAAGATGACAGTGAATA
TTTGAAAATATATGATGGTTATATTTCAGGTAAACAATTTTTAAAAGGAA
ACATAATTTTAAGAAGAAACAAAATAGCACTTATGTATATGAGATAGAAT
ATAGGAGAATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_g07.g1 MSMg01no380_g07.g1 CHROMAT_FILE:
MSMg01no380_g07.g1 PHD_FILE: MSMg01no380_g07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:27 2005
         (576 letters)



>mm_chr14_111916967_111917942
          Length = 976

 Score = 1036 bits (536), Expect = 0.0
 Identities = 566/576 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actggaagtcttgttgaggcaagcatttcttttcattgtccctaactgattttatgcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actggaagtcttgttgaggcaagcatttcttttcattgtccctaactgattttatgcaga 260

                                                                       
Query: 61  cttaaggatacagatagggaagggacatcatatgtgtgtgtccttcaactcctttagaaa 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 cttaaggatacagatagggaagggacatcatatgtatgtgtccttcaactcctttagaaa 320

                                                                       
Query: 121 atcaacaaagtaatataggtatggattattttgacatttaaagcaaatagattaagggaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 atcaacaaagtaatataggtatggattattttgacatttaaagcaaatagattaggggaa 380

                                                                       
Query: 181 ataaaacaaatatatcatattgacaaatattggtagatttagaattataaatatttattt 240
           |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 381 ataaaacaaatatatcatattgactaatattggaagatttagaattataaatatttattt 440

                                                                       
Query: 241 tctaaataactaaacccgtccaagaaattagaagaatttctactggtttgagatcaacct 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctaaataactaagcccgtccaagaaattagaagaatttctactggtttgagatcaacct 500

                                                                       
Query: 301 gtgatttccagtgagatttaagccagtcataaagtaagcctgtgtatcactaataaacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 gtgatttccagtgagatttaagccagtcataaagtaagcctgtgtatcaataataaacag 560

                                                                       
Query: 361 aaaattgtttctctttatagcttttatattttggtagagtcagattttgttcaccatcac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaattgtttctctttatagcttttatattttggtagagtcagattttgttcaccatcac 620

                                                                       
Query: 421 aaacaccttcatggaatgacttaagatagggaaggtatttcactcttgtcttcagtcatt 480
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaacaccatcatggaatgacttaagatagggaaggtatttcactcttgtcttcagtcatt 680

                                                                       
Query: 481 caagatagacaaggcccattgcagaacagccacccagatgagtagatttaaaacataatc 540
           |||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 681 caaggtagacgaggcccattgcagtacagccacccagatgagtagatttaaaacataatc 740

                                               
Query: 541 acacattcatggtcagattctatcatataaaaagat 576
           ||||||||||||||||||||||||||||||||||||
Sbjct: 741 acacattcatggtcagattctatcatataaaaagat 776


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)