BAC Information

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BAC

Clone NameMSMg01-380G09
Chromosome14 (Build37)
Map Location 111,917,167 - 111,917,678
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501, EG223186
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380G09.T7 (MSMg01no380_g09.b1)MSMg01-380G09.TJ (MSMg01no380_g09.g1)
ACCAG484783AG484784
length725779
length of high quality
(start - end)
540 (62 - 601)512 (66 - 577)
definitionCHROMAT_FILE: MSMg01no380_g09.b1 PHD_FILE: MSMg01no380_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:28 2005CHROMAT_FILE: MSMg01no380_g09.g1 PHD_FILE: MSMg01no380_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCTGTTGCAATTTTTAGGGCCACTTATATATACTATCATATCATCTGCA
AATAGAGATATTTTTACTTCTTCCTTTCCAATTTGTATCCCTTTGACCTC
TTTTGTTGTCCAATTGCTCTGGCTAGGACAGCAAGTACTATATTGAATAT
GTAGGGAGAAAGTGGGCAGCCTTGTCTAGTCCCTGGTTTTAGTGGGATTG
CTTCCATTTTTTCCATTTACTTTGATGTTGGCTACTAGTTTTCTGTAGAT
TGCTCTTATCATGTTTAGGTATGGGCCTTGAATTCCTGATCTTTCCAAGA
CTTTTATTATGAATGGGTGTTGGATTTTGTCAAATGCTTTCTCAGCATCT
AATGAGATGATCATGTGTTTTTTGTCTTTGAGTTTGTTTATATAGTGGAT
TACATTGATGGATTTCCATATATTAAACCATCCCTGCATTACTTGGATGA
AGCCTACTTGGTCATGATGGATGATCATTTTGATGTGTTCTTGCATTCGG
ATAGTATGAATTTTATTGAGTATTTTTGTTGTGTCTTTATGTGGTTTAGG
TATCAGAGTAATTGTGGCTTTGTAAGAATTAATTGTGTAGAGCACCTACT
GTTTCAATTTTGCGGAATAGTTTGAGAACAACTGTTATTGCGCTTTCTTT
TGAAGTTGGAAAATTGCCGAATAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXACTGGAAGTCTTGTTGAGGCAAGCATTTCTTTTCA
TTGTCCCTAACTGATTTTATGCAGACTTAAGGATACAGATAGGGAAGGGA
CATCATATGTGTGTGTCCTTCAACTCCTTTAGAAAATCAACAAAGTAATA
TAGGTATGGATTATTTTGACATTTAAAGCAAATAGATTAAGGGAAATAAA
ACAAATATATCATATTGACAAATATTGGTAGATTTAGAATTATAAATATT
TATTTTCTAAATAACTAAACCCGTCCAAGAAATTAGAAGAATTTCTACTG
GTTTGAGATCAACCTGTGATTTCCAGTGAGATTTAAGCCAGTCATAAAGT
AAGCCTGTGTATCACTAATAAACAGAAAATTGTTTCTCTTTATAGCTTTT
ATATTTTGGTAGAGTCAGATTTTGTTCACCATCACAAACACCTTCATGGA
ATGACTTAAGATAGGGAAGGTATTTCACTCTTGTCTTCAGTCATTCAAGA
TAGACAAGGCCCATTGCAGAACAGCCACCCAGATGAGTAGATTTAAACAT
AATCACACCTTCATGGTCAGATTCTATCATATAAAAAGATGACAGTGAAT
ATTTGAAAAAAAATGATGTTTATATTTCAGCGAAAACATTTTTATAAGGA
AACCTACATTTTTAGAACAAACTATAATAGCCTTTTTGTATTTGAGATAG
AAAATTTGAGAATTTTTTTAAATTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_g09.g1 MSMg01no380_g09.g1 CHROMAT_FILE:
MSMg01no380_g09.g1 PHD_FILE: MSMg01no380_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:28 2005
         (512 letters)



>mm_chr14_111916967_111917878
          Length = 912

 Score =  913 bits (472), Expect = 0.0
 Identities = 502/512 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actggaagtcttgttgaggcaagcatttcttttcattgtccctaactgattttatgcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actggaagtcttgttgaggcaagcatttcttttcattgtccctaactgattttatgcaga 260

                                                                       
Query: 61  cttaaggatacagatagggaagggacatcatatgtgtgtgtccttcaactcctttagaaa 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 cttaaggatacagatagggaagggacatcatatgtatgtgtccttcaactcctttagaaa 320

                                                                       
Query: 121 atcaacaaagtaatataggtatggattattttgacatttaaagcaaatagattaagggaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 atcaacaaagtaatataggtatggattattttgacatttaaagcaaatagattaggggaa 380

                                                                       
Query: 181 ataaaacaaatatatcatattgacaaatattggtagatttagaattataaatatttattt 240
           |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 381 ataaaacaaatatatcatattgactaatattggaagatttagaattataaatatttattt 440

                                                                       
Query: 241 tctaaataactaaacccgtccaagaaattagaagaatttctactggtttgagatcaacct 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctaaataactaagcccgtccaagaaattagaagaatttctactggtttgagatcaacct 500

                                                                       
Query: 301 gtgatttccagtgagatttaagccagtcataaagtaagcctgtgtatcactaataaacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 gtgatttccagtgagatttaagccagtcataaagtaagcctgtgtatcaataataaacag 560

                                                                       
Query: 361 aaaattgtttctctttatagcttttatattttggtagagtcagattttgttcaccatcac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaattgtttctctttatagcttttatattttggtagagtcagattttgttcaccatcac 620

                                                                       
Query: 421 aaacaccttcatggaatgacttaagatagggaaggtatttcactcttgtcttcagtcatt 480
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaacaccatcatggaatgacttaagatagggaaggtatttcactcttgtcttcagtcatt 680

                                           
Query: 481 caagatagacaaggcccattgcagaacagcca 512
           |||| ||||| ||||||||||||| |||||||
Sbjct: 681 caaggtagacgaggcccattgcagtacagcca 712


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)