BAC Information

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BAC

Clone NameMSMg01-381I24
Chromosome14 (Build37)
Map Location 77,256,667 - 77,257,095
singlet/doubletsinglet
Overlap genenone
Upstream geneGtf2f2, LOC668504, Kctd4, 1200011I18Rik, Nufip1, LOC100043752, 2900040C04Rik, Tsc22d1, 2810032E02Rik
Downstream geneLOC100043753, LOC100043201, 9030625A04Rik, Ccdc122, D230005D02Rik, LOC100043755, LOC676171, EG629678, Gm1587, Dnajc15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381I24.T7 (MSMg01no381_i24.b1)MSMg01-381I24.TJ (MSMg01no381_i24.g1)
ACCAG485674AG485675
length754763
length of high quality
(start - end)
427 (38 - 464)429 (71 - 499)
definitionCHROMAT_FILE: MSMg01no381_i24.b1 PHD_FILE: MSMg01no381_i24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:01 2005CHROMAT_FILE: MSMg01no381_i24.g1 PHD_FILE: MSMg01no381_i24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACT
GGTCTTACCACATTCCCCATCATCCTGAAGCAGCTGGGCTGATAGAAAGA
TGGAATGGCCTTTTGAAGACGCAGTTACAGCGCCAATTAGGTGGTAACAG
CTTGGAAGGCTGGGGCAGAGTTCTTCAGAAGGCAGTATATGCTTTGAATC
AGCGCTCAATATATGGTACAGTTTCACCCATAGCCAGGATTCATGGGTCC
AGGAATCAAGGGGTGGAAAAGGGAATAGTTCCACTTACTATCACTCCTAG
TGACCCTCTAGGAAAGTTTTTGCTTCCTGTCCCCATAACTCTAGGTTCTG
CTGGCCTAGAAGTTTTGGCTCCAGAGAGGGGAATGCTCCTACCAGGAGCT
ACAACAAACATTCCACTGAACTGGAAGCTCAGACTTCCCCCTGGTCATTT
TGGGCTTCTAATGCCCTTAAACCAACAGGCTAAAAAAGGAATAACAGTGT
TAGGAGGGGTGATAGATCCAGATTACCCTGGGGAAAATTGGATTACTCTT
TCCAATGGTGGGNAGCAAGATTATGTCTGGGAGTGTAGGAGACCCCCTTA
GGGGGCCTCCTAATATTACCAGGTCCTGTGATTAAAGGCCATGGGGAAAT
TACACAGCCCTATCCCCAGCCGGAGGAACAAGGGACCCTACCCCCCCTGA
ATGAAAGGGAGGGGTCCATCCTCCCCGAAAAAAAAACAAAACCGGTTGAG
GGGT
CATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTACATGCTGCCAACAGAGAATAACCGGTGC
TAAAAAGTCAACCAGTGTCAGAGAATACTTAGTGTAGGATGAAACTGAGT
TTGGTGGTTAACTCCAGACTCAACTTTTTCTTATTTACCAGACTGCGTCT
CTTCCAACAGTGTTAGGTTTCCAGAGAAGTAAACAGAAAGGGCAGCAAGT
TCCCGCCTTCCCCCTGGTCTCCCCCTAGATCCCTGCATCATCAGCACTTT
GTATTAGAGGGGTGGATTTCTTACCCTGGATGAGCTGCTGTCAATAAGTT
TATTTACTAGAGTTCATGGTTTACACTGGCTCTCATTCTCTGTGTTTTAT
GGATGCATAACACGTGTCCATCATTGCAAACCCACCCAGAATCCTAAGGC
TTTAAACCCTGTCTCTACTTATTTGTAGCCCTCCTCGCAGCACTGTTTTG
ATTTCATGTNAATAAATGGTTGGGCTCTCCCTCGAGACAAGGAACAAAGC
GCAGGCTCCCAGGTTCCCGTGTCCCTCCCCCGGGTTGCACGGCCCATGGT
TTGACTTTTTCTAACTGGTAGGGAGAACAGCATACCGGCAACGGGGGGGG
GGGTTGTTCATCTTTCTTCTTTTCACCCTTCATTTTTCTTTCCCTTCCTT
CTCCTTTTTTCGTTTTCTTTCCCCCCTTCCTTTTCTTTTCCCCCCCCCGT
TTCTTTTTTACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_i24.g1 MSMg01no381_i24.g1 CHROMAT_FILE:
MSMg01no381_i24.g1 PHD_FILE: MSMg01no381_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:01 2005
         (429 letters)



>mm_chr14_77256467_77257295
          Length = 829

 Score =  760 bits (393), Expect = 0.0
 Identities = 420/429 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacatgctgccaacagagaataaccggtgctaaaaagtcaaccagtgtcagagaatactt 60
           |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 201 tacatgctgccaacagagaataacgggtgctaagaagtcaaccagtgtcagagaatactt 260

                                                                       
Query: 61  agtgtaggatgaaactgagtttggtggttaactccagactcaactttttcttatttacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgtaggatgaaactgagtttggtggttaactccagactcaactttttcttatttacca 320

                                                                       
Query: 121 gactgcgtctcttccaacagtgttaggtttccagagaagtaaacagaaagggcagcaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactgcgtctcttccaacagtgttaggtttccagagaagtaaacagaaagggcagcaagt 380

                                                                       
Query: 181 tcccgccttccccctggtctccccctagatccctgcatcatcagcactttgtattagagg 240
           ||||||||||||||| |||||| ||||| |||||||||||| ||||||||||| |||| |
Sbjct: 381 tcccgccttccccctagtctcctcctagttccctgcatcattagcactttgtaatagacg 440

                                                                       
Query: 241 ggtggatttcttaccctggatgagctgctgtcaataagtttatttactagagttcatggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtggatttcttaccctggatgagctgctgtcaataagtttatttactagagttcatggt 500

                                                                       
Query: 301 ttacactggctctcattctctgtgttttatggatgcataacacgtgtccatcattgcaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttacactggctctcattctctgtgttttatggatgcataacacgtgtccatcattgcaaa 560

                                                                       
Query: 361 cccacccagaatcctaaggctttaaaccctgtctctacttatttgtagccctcctcgcag 420
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cccatccagaatcctaaggctttaaaccctgtctctacttatttgtagccctcctcgcag 620

                    
Query: 421 cactgtttt 429
           |||||||||
Sbjct: 621 cactgtttt 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)