BAC Information

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BAC

Clone NameMSMg01-382G01
Chromosome14 (Build37)
Map Location 53,394,606 - 53,394,977
singlet/doubletsinglet
Overlap geneEG386506
Upstream geneEar-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180
Downstream geneLOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308, LOC328483, EG667765, EG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382G01.T7 (MSMg01no382_g01.b1)MSMg01-382G01.TJ (MSMg01no382_g01.g1)
ACCAG486295AG486296
length770758
length of high quality
(start - end)		280 (28 - 307)372 (57 - 428)
definitionCHROMAT_FILE: MSMg01no382_g01.b1 PHD_FILE: MSMg01no382_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:06 2005CHROMAT_FILE: MSMg01no382_g01.g1 PHD_FILE: MSMg01no382_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:06 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CCGCTATACGACTCCTATTTCCAGAGGATCCGCGGAATTCTTTGTTCTTC
CCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAGCCCACCTT
CTTGAGTTCTTTACATATATTGGATATTAGTCCCCTATCTGATTTGGGAT
AGGTAAAGATCCTTTCCCAATCTGTTGGTAGTCTTTTTGTCTTATTGACG
GTGTCTTTTGCCTTGCAGAAGCTTTGCAACTTTATGAGGTCCCATATATC
GATTCTCGTTCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTA
CCCATATCTTCTAGGCTTTTCCCTACTTTCTCCTCTATAAGTTTCAGTGT
CTCTGGTTTTATGTGGAGTTCCTTAATCCACATATATTTGACCTTAGTAC
AAGGAGATAGGAATGGATCAATTCGCATTCTTCTACATGATAACCACCAT
TTGTGCCAGCATCATTTGTTGAATATGCTGACTTTTTTCCTCTGGGTGTT
TTTAGCTCCCTTGACAATTATGATTCGACCATAGGTGTGTGGGTTCATCT
CTGGTCCTTCATTGCCGCTCTTTTGCTCTATGTGTCTGTCAACTTTACCA
TTTTTATTCCTCTTTTTATCTTCGTTTGCCTCTGGTATTATAGTTTTTAT
TTTATGTTAGTCCAATATATACTATCTTCTTCCTTTTTCTTTTTTGTTTG
CTATCTACTTTTTTTTTCTCTCCCGCCCTTTTGCTTATTTATCACCCCAT
ATACTTGTCTAATTATTTCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXACCGGACTGTGGTGGACATACTCCTTGATGTCAGGGTAGTGCCC
TAGGAGGGCATAGGGGCAGTAGGAGATGCTCATGGAGACAACACCCATGG
TGCTGATGGTGACCATGGCCACATAGACGTTGGGAAACATGGCCATCACA
CCGGTGCCCACGGAGAAGCCCAGTGTCCCCAACATGTAGATGATCCTGTT
GCTCAGGTCATAGTTGTCCAGGTACTTCTGTAGCAAGGCTGAGCATATAA
CACCAGTAGCAGAGTAGATGACCAGGCCCCAGCAGCCCATCTTCACGCCA
GCATTGTAGGCATGCCACTTGGTGGAGTTGGAGGGGGCCTGCGGGTTCCC
TTTGAAAATAACCTGGCCCGTGAAGTCAGTATAGAAGACAGACTCTGTGA
TGACAGAGAACCAAGTGAGAAGGTGGCAGAGGCAGAGCCATGCTCTTGTT
GCCTCGGTTGGTGTTTTTACATAAAGTACTTTAATGTGCATGACATTCTT
GCTGTTCATTGATCATTCTAAAGCATATATATATACATATATTTTTTGAC
GATGAATACTTTCTATTTTTTAACTAATATCTTCTTGATTTTTCTTGCGT
CCCTCCATATACATTTTTGAGCCTTTACCTTTTTTCTATGTCATGATATC
CCCCTTTTTCCCTCTTTTTTGTTTCAACCCCACTTCTCGTTTTTTTTTCT
TGGCCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_g01.g1 MSMg01no382_g01.g1 CHROMAT_FILE:
MSMg01no382_g01.g1 PHD_FILE: MSMg01no382_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:06 2005
         (372 letters)



>mm_chr14_53394406_53395177
          Length = 772

 Score =  719 bits (372), Expect = 0.0
 Identities = 372/372 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   accggactgtggtggacatactccttgatgtcagggtagtgccctaggagggcatagggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 accggactgtggtggacatactccttgatgtcagggtagtgccctaggagggcatagggg 513

                                                                       
Query: 61  cagtaggagatgctcatggagacaacacccatggtgctgatggtgaccatggccacatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 cagtaggagatgctcatggagacaacacccatggtgctgatggtgaccatggccacatag 453

                                                                       
Query: 121 acgttgggaaacatggccatcacaccggtgcccacggagaagcccagtgtccccaacatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 acgttgggaaacatggccatcacaccggtgcccacggagaagcccagtgtccccaacatg 393

                                                                       
Query: 181 tagatgatcctgttgctcaggtcatagttgtccaggtacttctgtagcaaggctgagcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tagatgatcctgttgctcaggtcatagttgtccaggtacttctgtagcaaggctgagcat 333

                                                                       
Query: 241 ataacaccagtagcagagtagatgaccaggccccagcagcccatcttcacgccagcattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ataacaccagtagcagagtagatgaccaggccccagcagcccatcttcacgccagcattg 273

                                                                       
Query: 301 taggcatgccacttggtggagttggagggggcctgcgggttccctttgaaaataacctgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 taggcatgccacttggtggagttggagggggcctgcgggttccctttgaaaataacctgg 213

                       
Query: 361 cccgtgaagtca 372
           ||||||||||||
Sbjct: 212 cccgtgaagtca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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