BAC Information

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BAC

Clone NameMSMg01-382J08
Chromosome14 (Build37)
Map Location 109,189,761 - 109,247,112
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC668757, EG668761
Downstream geneSlitrk1, LOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382J08.T7 (MSMg01no382_j08.b1)MSMg01-382J08.TJ (MSMg01no382_j08.g1)
ACCAG486453AG486454
length771780
length of high quality
(start - end)		509 (33 - 541)438 (61 - 498)
definitionCHROMAT_FILE: MSMg01no382_j08.b1 PHD_FILE: MSMg01no382_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:22 2005CHROMAT_FILE: MSMg01no382_j08.g1 PHD_FILE: MSMg01no382_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,246,738 - 109,247,112)(109,189,761 - 109,190,197)
sequence
CGGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATATACAA
ATCTCGAGAAATTTTCAAGTCTGGTTAAATAACCTAACAAACAAATAAAT
TCGTCAGCATATATCACATATGTGAAAGGTAAAGTACTATATATGTTTAT
CACCAAATATCTTTAATTAACAGAATTTATCAATGATGATCCATTAAAAA
AGATATACAGACACTATTGCATATGCCAGCAAGATTTTGCTGAAAGGACC
CTGATAGAGCTGTCTCCTGTGAGGCTTTGCCAGTGCCTGGCAAATACAGA
AATGGATGCTCACAGTCATCTATATATAGGATAACACACAGGACCCCCAA
TGTAGGAGCTAGAGAAAGTACCCAAGAGCTAAAGGGGTTTGCAACCCTAT
AGGTGGAACATAATATGAACTAATCAGTACCCCCAGAGCTGGGGGAGGGT
ATAGGGGACCTTTGAGATAGCATTTGAAATGTAATGAAGAAAATATCTAC
TAAAAAAATGAAAAAGATAATTTTCTGAAATTCTAATTATAAAAATTCAG
AAATTGTATGCTAGATATTTTTATATATTTCAGAATTATTTANATATTTT
ATTTAATATATTTTTACATATTTTAAGTTTGTTAAAGAGGTACAAAACTT
GTAAAAAAAAAATCTCCCTTAGAAGGTTATTTTTTAAAAAGGTTTACTAT
AAAATTTTAAATTCCTATGTTTTAGGAACCATGTTTAAGCAATTAAATTT
ACTTTTTTATTGTTTTTATAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCAGGATGGAGAAGGGGGAATGGATGGGTATGGGAAACACC
CTCAAAGAAGCAGGGTGAGAGGGGATATAATAGGGGGTTCTCAGAAGGGG
AACCAGGAAAGGGGATAACATTTGAAATGCAAATAAAGAAAATTTCTAAT
AAAATATTTCAAAAGAGAACAAATATAAAGCATGCATTTCTACTCCTATC
AACTTTGCATTCCTTGTGTGCCAACATTTAAAAAGTTAAAATGTAGTTCG
TTGATTGTCTAATGTCTTAGGAAAATTGATTATCTTCAACATTTAGACAC
AGTTAAAACATTCATTAGGCACATCCCTATTGTTTGCTTGACATTGTTTC
TGAGAAGTTTCTAGTTCTCTTACAATTATCTCCTTTTACATCTTTTGGCA
CAGAAGAATGTTGTTAGTAAGGTCTAAGTGTCTTATAATGCACAGTATTT
GTTGTTCTTAATAAGGTCATTGTGTATTTAGGCCAAATTAACACAGGGAT
TTTTTTCCTGACTTTACTTTCTACTGATACAAATCTAATTAACCTGGAAG
TATCTTTTTTGTTCTTTACTTGACCCTATGTTATGTACCTTATGATATTT
TTTGGAGATTACCACATTTCTTCCTTCCACATAGTCCTTTTCCGTTCAAC
CGCCACTATTATTCTCCCTTCTTTCACCTTATGAGTCCTTTCCACATACC
CCTTCTTATACCAGTTCCTCTTATCGGTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_j08.b1 MSMg01no382_j08.b1 CHROMAT_FILE:
MSMg01no382_j08.b1 PHD_FILE: MSMg01no382_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:22 2005
         (509 letters)



>mm_chr14_109246738_109247646
          Length = 909

 Score =  694 bits (359), Expect = 0.0
 Identities = 371/375 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatatacaaatctcgagaaattttcaagtctggttaaataacctaacaaacaaat 64
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gaattcatatacaaatcaagagaaattttcaagtctggttaaataacctaacaaacaaat 316

                                                                       
Query: 65  aaattcgtcagcatatatcacatatgtgaaaggtaaagtactatatatgtttatcaccaa 124
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aaagtcgtcagcatatatcacatatgtgaaaggtaaagtactatatatgtttatcaccaa 256

                                                                       
Query: 125 atatctttaattaacagaatttatcaatgatgatccattaaaaaagatatacagacacta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 atatctttaattaacagaatttatcaatgatgatccattaaaaaagatatacagacacta 196

                                                                       
Query: 185 ttgcatatgccagcaagattttgctgaaaggaccctgatagagctgtctcctgtgaggct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ttgcatatgccagcaagattttgctgaaaggaccctgatagagctgtctcctgtgaggct 136

                                                                       
Query: 245 ttgccagtgcctggcaaatacagaaatggatgctcacagtcatctatatataggataaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 ttgccagtgcctggcaaatacagaaatggatgctcacagtcatctatatataggataaca 76

                                                                       
Query: 305 cacaggacccccaatgtaggagctagagaaagtacccaagagctaaaggggtttgcaacc 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 75  cacaggacccccaatgtaggagctagagaaagtacccaagagctaaaggggtctgcaacc 16

                          
Query: 365 ctataggtggaacat 379
           |||||||||||||||
Sbjct: 15  ctataggtggaacat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no382_j08.g1 MSMg01no382_j08.g1 CHROMAT_FILE:
MSMg01no382_j08.g1 PHD_FILE: MSMg01no382_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:22 2005
         (438 letters)



>mm_chr14_109189561_109190398
          Length = 838

 Score =  822 bits (425), Expect = 0.0
 Identities = 434/437 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggatggagaagggggaatggatgggtatgggaaacaccctcaaagaagcagggtgaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggatggagaagggggaatggatgggtatgggaaacaccctcaaagaagcagggtgaga 260

                                                                       
Query: 61  ggggatataatagggggttctcagaaggggaaccaggaaaggggataacatttgaaatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggatataatagggggttctcagaaggggaaccaggaaaggggataacatttgaaatgc 320

                                                                       
Query: 121 aaataaagaaaatttctaataaaatatttcaaaagagaacaaatataaagcatgcatttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaataaagaaaatttctaataaaatatttcaaaagagaacaaatataaagcatgcatttc 380

                                                                       
Query: 181 tactcctatcaactttgcattccttgtgtgccaacatttaaaaagttaaaatgtagttcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tactcctatcaactttgcattccttgtgtgccaacatttaaaaagttaaaatgtagttcg 440

                                                                       
Query: 241 ttgattgtctaatgtcttaggaaaattgattatcttcaacatttagacacagttaaaaca 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgattgtctaatgtcataggaaaattgattatcttcaacatttagacacagttaaaaca 500

                                                                       
Query: 301 ttcattaggcacatccctattgtttgcttgacattgtttctgagaagtttctagttctct 360
           ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcattaggcacatccccattgtttccttgacattgtttctgagaagtttctagttctct 560

                                                                       
Query: 361 tacaattatctccttttacatcttttggcacagaagaatgttgttagtaaggtctaagtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacaattatctccttttacatcttttggcacagaagaatgttgttagtaaggtctaagtg 620

                            
Query: 421 tcttataatgcacagta 437
           |||||||||||||||||
Sbjct: 621 tcttataatgcacagta 637


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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