BAC Information

Click to search

BAC

Clone NameMSMg01-382N01
Chromosome14 (Build37)
Map Location 17,608,403 - 17,608,874
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667205, 1700062C10Rik, LOC667209, EG435389, Oxsm, Ngly1, Top2b, Rarb
Downstream geneTpi-rs9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382N01.T7 (MSMg01no382_n01.b1)MSMg01-382N01.TJ (MSMg01no382_n01.g1)
ACCAG486630AG486631
length745869
length of high quality
(start - end)		497 (57 - 553)34 (57 - 90)
definitionCHROMAT_FILE: MSMg01no382_n01.b1 PHD_FILE: MSMg01no382_n01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:40 2005CHROMAT_FILE: MSMg01no382_n01.g1 PHD_FILE: MSMg01no382_n01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCTACGCT
TACCGGGATGGACTTGAACTCGAAATCTGCCTTCATCTGCAAGGCATGAA
CCACTACATCAGTTTGCTTTTTTGTTTGTTTTCTTTGCTTTGTACTTGTT
GAGGTGGTGCTAGAGCACTGTGTCTTATCCACTCCACCCTGGAACTTGTA
CTCTGCCTGCCTCAGTCACCTAAGTGCTAGGACTGTGGGCATGCTTCACT
GTGAAGAGTGTTGTTGTAGACTTACATACCTATATAGTTGGACACTACAG
AAACATTATTTATAAGACTCACTCAACATGGAAACACAGGCAGAGTTTGG
GCATCCATATGGTGGGCTTATGGAGTACTGTTGAGGCAACTGTGTCTGCT
GACATATTAAAACTTCAAAGAAATTGGAAAGAAATAAATGAAAGTTGGTC
TTTTGAGTTCAATAAATGTGGTATCTTCATAACCGTATGCTATATATAGA
TTTGTCATCTGCTACATGGTTTGGCGAGAAGATATTTGATGTTAATTGTT
AATAAAATCACCAGTTTCCCACTGTTTATAATTGTTATAAGATCACTTGT
TCTGCCTTCCCCTGATAAAGTACTTCCTAGGGGATCTTCCTTCAGGTGTA
CTTGTTTGACATAACCTTGCATTGTATGTCCTCCTTACCTGAAATTGCTT
TTCCCTGTTTTTGCATCCCCCCGAATAGTGGTATTTCTTATACTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTCTCCAGGGCCGGGGTGGGGGTGGGGGGTGGATANAANTATAT
TTTTTTCCCCATAATTTTAAATAAATTATATTTATTTATTTTTATCTTTT
TGTTTTACTTCAGATCCGTTCCTTCCACAACACCCAAAACACCATACCCT
TAATAACATCACACCAACCCCCCAACTACTACCGACCTCAATAATTGCTT
TTTTTTTCTAAGTCTATGCTTGGTCAACTCCTTTGATGGCCCTTTCTTAT
AAATTATGTATAAATACCCCACATCTTTTTTTTTTTCCTTCTATTTCGTC
ACCATCCTCCCCATATTCTCCCTTCTTTAATTCCCATTCCCACCCCCCTC
CCCCCCTTTCTTCTTCTCACATCTCACTCACATAACCCCATTATCATCAC
ACTCACTTTTACTATGTTTTGTTCTTAGTGTTCTTTACTCCACTAAATAT
CTCTCCCTACATTCTACTATCTTTTATCAATAAATNCCCCCTCCCCGTCT
TTACTAACTTTTATCTCCTCCCCGACTATCCNCNTCACCCTTCCGCGCTC
CCTCTCCGTTTTATACTTTTCGAATCCCCTTCTCTTTTTTCCCCCCATCT
ACTTTCCCTTTTCATGACATCCTCTATTTCTCNNCATCGCACCTTCACCC
TCTTATTATTTTTTCTTTCATCTTCCTCCTCCCCCTTTCAGTCTTTTCCG
TCAATTTGTTTTTGGAATATTTTCTCCTATTATTCCTTCTTCTTATATTC
TCTCCTTCCTATCCTTATATTTCATCATCACCCTTATCTAACACTATCGT
CCCACTCTCTTTTCTTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_n01.b1 MSMg01no382_n01.b1 CHROMAT_FILE:
MSMg01no382_n01.b1 PHD_FILE: MSMg01no382_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:40 2005
         (497 letters)



>mm_chr14_17608010_17608906
          Length = 897

 Score =  905 bits (468), Expect = 0.0
 Identities = 471/472 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatggacttgaactcgaaatctgccttcatctgcaaggcatgaaccactacatcagtttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 gatggacttgaactcgaaatctgccttcatctgcaaggcatgaaccactacatcagtttg 806

                                                                       
Query: 61  cttttttgtttgttttctttgctttgtacttgttgaggtggtgctagagcactgtgtctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cttttttgtttgttttctttgctttgtacttgttgaggtggtgctagagcactgtgtctt 746

                                                                       
Query: 121 atccactccaccctggaacttgtactctgcctgcctcagtcacctaagtgctaggactgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atccactccaccctggaacttgtactctgcctgcctcagtcacctaagtgctaggactgt 686

                                                                       
Query: 181 gggcatgcttcactgtgaagagtgttgttgtagacttacatacctatatagttggacact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gggcatgcttcactgtgaagagtgttgttgtagacttacatacctatatagttggacact 626

                                                                       
Query: 241 acagaaacattatttataagactcactcaacatggaaacacaggcagagtttgggcatcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acagaaacattatttataagactcactcaacatggaaacacaggcagagtttgggcatcc 566

                                                                       
Query: 301 atatggtgggcttatggagtactgttgaggcaactgtgtctgctgacatattaaaacttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atatggtgggcttatggagtactgttgaggcaactgtgtctgctgacatattaaaacttc 506

                                                                       
Query: 361 aaagaaattggaaagaaataaatgaaagttggtcttttgagttcaataaatgtggtatct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaagaaattggaaagaaataaatgaaagttggtcttttgagttcaataaatgtggtatct 446

                                                               
Query: 421 tcataaccgtatgctatatatagatttgtcatctgctacatggtttggcgag 472
           |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 445 tcataaccgtatgctatatatagatttgtcatctgctagatggtttggcgag 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |