BAC Information

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BAC

Clone NameMSMg01-382N15
Chromosome14 (Build37)
Map Location 109,370,603 - 109,371,054
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668757, EG668761, Slitrk1
Downstream geneLOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382N15.T7 (MSMg01no382_n15.b1)MSMg01-382N15.TJ (MSMg01no382_n15.g1)
ACCAG486657AG486658
length991758
length of high quality
(start - end)		---594 (58 - 651)
definitionCHROMAT_FILE: MSMg01no382_n15.b1 PHD_FILE: MSMg01no382_n15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:42 2005CHROMAT_FILE: MSMg01no382_n15.g1 PHD_FILE: MSMg01no382_n15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATAAAATACAAGCCATAANNAAACATAATCACCAAAGCATAGCGCAGCCA
CGAATAAACCCCTCCTCCTCACTTCCTCTCCCCGCCTGCAGGCCGGCCTA
TAATATTTCTACAGTCGTATAGAAGATATATCTTTTATTATCTATAAATA
TTATTCTAATCTTATTCTTTCCACCAATTATAACCCTTTTAGCACCTAAA
ATCTCCAAATACCTACAACCGAACTAACATCTTGCAATGTTATNANGTNC
CNNCCTCGCCCTAAAACACTCGCACGAGGNTATTTGCGNNNGCCCTCCCT
TAAAAAAAAAATATTTGGGCCGGGGGNCCCGGGCCTTTAAAATAACCGGA
AAACCTTTTCCAAACCTTTATTTATTTTTCCCCCCAAAAAGGGGAAAACC
CCCCGGCCGGGGNAAAAAATTTTCCCAAAAAAATTAAAAAAAATTTATTC
CTCCCCTNNTTAAAAAANNAAAAAGTAAGGAAAAANNAAGGGGGNAAAAA
AAGGNTTCCCAAATTTTTTTTTCCCCCTTTCCCTTAAAAAAAATTAATTT
GGTTTTTTTGGGCCCTTGGGGGTATTTTTATTCCCCCTTGGGGTTTTTTG
GGGGGATAAAAAAGCCCCCCCCCCCCCCAAAAAGGGGAAGAGGAGGTTCC
CCCCGGGGGGGGGGGGGTTTCCCCCCCCACAAATTGTGGGGGGGGAAAAA
AAAAAAAAAACCCCCCCCCTTTTATAACAAAAAAAAAGAGGGAGAGGGTN
TNNTTTTTTTTAAGAGGGAAAAAACACCACTTTTTCTCTCCCCCAAGGGG
GGGGGGTGGGGGCGCCCCCCCCCAAAACAAAAGAGGNNGGCAAAAAAAAA
AAAAAAAGGGGGGGGGGGGGAGGANAAAAAAAAAAAAAAAANAANNNAAT
CNCNCCCCCCCCCCCCCAAAAAAAAANANNNATTTTTTTGTGGGTGGGTG
GGTGGTGAGGNNNNACTACNCCACTCGAAAACAAAAAAAAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXATGATTCCAAATGATACTTGACCAGCCACCATAATTAATAGAA
AGACTATGTTGATATAGATGTCCAATTTTTAAATTATGAAATATTTTATG
CATATATCCCATATTATGATAGACAAAAGTGAACTATAAGGATTGAAGAG
TTAATTTAGTTTTAAGAGCACTGTTGTTCTTCCAGACAATCAAAAGTGGG
GACTTTTGATTCCAACACCTACATACATTTATCTGTTTCTCCAGTACCTG
GTCTTCTAATATCTTCTTTGAAACTTTTCAGTTTAGAATTCTGGAAATGG
TGCACTAGTTTATATGGAGTAAAAACATTCATAATATGAAAACAATAAAG
TAAGCAAATTTAATTTTTTTAAATGTGCTGATACACATCACTAAATGATA
ACAGGGGATGGTTAAAGCCTGGCAAATACATGCTATTAGGCTAAATTCGG
ATGAACAGAAGATACTATCCCAGAATAAATACTCAAATCAGTTAAAAGGT
TGCAATGACAAATTACAAAAATGGTTATTACCTTTGCTTATTACTGTCAT
TTCAAATTCTTTATTTCTAACAAACAAGAGCTTTCAACACTATTTTAATT
GTTTATTATAAATATGCATGCACAATGCTCAAATGACTTTTAAAAGCTTA
ATAACATTATAGGAACCATAAATGAAAGCTTAAGTATTTGAGAAAAATAA
AATATATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_n15.g1 MSMg01no382_n15.g1 CHROMAT_FILE:
MSMg01no382_n15.g1 PHD_FILE: MSMg01no382_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:43 2005
         (594 letters)



>mm_chr14_109370061_109371054
          Length = 994

 Score =  812 bits (420), Expect = 0.0
 Identities = 444/452 (98%), Gaps = 1/452 (0%)
 Strand = Plus / Minus

                                                                       
Query: 144 ttaatttagt-tttaagagcactgttgttcttccagacaatcaaaagtggggacttttga 202
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994 ttaatttagtagttaagagcactgttgttcttccagacaatcaaaagtggggacttttga 935

                                                                       
Query: 203 ttccaacacctacatacatttatctgtttctccagtacctggtcttctaatatcttcttt 262
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 ttccaacacctacatacatctatctgtttctccagtacctggtcttctaatatcttcttt 875

                                                                       
Query: 263 gaaacttttcagtttagaattctggaaatggtgcactagtttatatggagtaaaaacatt 322
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 874 gaaacttttcagtttagaattctggaaatggtgcactggtttatatggagtaaaaacatt 815

                                                                       
Query: 323 cataatatgaaaacaataaagtaagcaaatttaatttttttaaatgtgctgatacacatc 382
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 cataatatgaaaataataaagtaagcaaatttaatttttttaaatgtgctgatacacatc 755

                                                                       
Query: 383 actaaatgataacaggggatggttaaagcctggcaaatacatgctattaggctaaattcg 442
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 754 actaaatgataacagaggatggttaaagcctggcaaatacatgctattaggcttaattcg 695

                                                                       
Query: 443 gatgaacagaagatactatcccagaataaatactcaaatcagttaaaaggttgcaatgac 502
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 gatgaacagaagatactgtcccagaataaatactcaaatcagttaaaaggttgcaatgac 635

                                                                       
Query: 503 aaattacaaaaatggttattacctttgcttattactgtcatttcaaattctttatttcta 562
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 aaattacaaaaatggttattacctttgcttattactgtcatttcaaattctttatttcta 575

                                           
Query: 563 acaaacaagagctttcaacactattttaattg 594
           ||||||||||||||||||||||||||||||||
Sbjct: 574 acaaacaagagctttcaacactattttaattg 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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