BAC Information

Click to search

BAC

Clone NameMSMg01-383G02
Chromosome14 (Build37)
Map Location 24,384,385 - 24,560,296
singlet/doubletdoublet
Overlap geneKcnma1
Upstream gene1700112E06Rik, LOC665068
Downstream geneLOC620499, Dlg5, LOC100039335, E330034G19Rik, LOC669325, Polr3a, Rps24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383G02.T7 (MSMg01no383_g02.b1)MSMg01-383G02.TJ (MSMg01no383_g02.g1)
ACCAG487063AG487064
length759764
length of high quality
(start - end)
602 (27 - 628)429 (67 - 495)
definitionCHROMAT_FILE: MSMg01no383_g02.b1 PHD_FILE: MSMg01no383_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:25 2005CHROMAT_FILE: MSMg01no383_g02.g1 PHD_FILE: MSMg01no383_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,559,765 - 24,560,296)(24,384,385 - 24,384,813)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGGATCCGCGGAATTCAGT
GTTAGTTAACAGACTTTTAGCTACAATTAAGGGAGAACATTTTTTCCCTC
ACAAGGAGAAGGCAGAGCTGCTATGCTAGCATGTTAAAGGTGGCATCTCT
AGATCTTCTCAACTCTTTGAGAGATAGGCAGCTTCACAACGTTTTAGAGG
TGGAAACAAGAGGGGAAGGGCAATATCAGACCAAGCTATTTTGTCTTCCT
TGTCTCTCATACTTCTGGACAAATCTATGTATGACCTTCCATATTTCTAG
CTGCAAGAGAGGCTGCCATGTGATTATTGAGTCTTCAAGTCTTTAGGAAG
GACAGCTTTGTTGTGGTATCTCCAACCCAAATAAGCCCTGGCAATGAAAA
CAGGACTCAATTAATATGAATACATGCTGTGCACCTAGATTGGGCAGATC
TACTGCTACACTACCATCTTCCCCACCTATGAGACCCCTTAGAACTTTCT
CCGAGCCATGTGCTTCTGCTCTGCTTTTCTTCTTCTTCCTCTTCTTCCTC
CTCCTCTCTGTCCTCTTCCTCTTCCATTTTCTCCTTCTTCTTTCTCCTCA
CCTTCAGCTCCACCTTCACTTTTATCTGCCCAACCATCAGCTCTTTTTAT
TTTACCAATTAAGGTGGGAAGCAGGGTTACAGGAAATCACCTGAGTGCTA
ACTCCTTCCCTTGTCCAAACCCCTTCCACCAGTACCGAATTTACATCCTA
TTATAATAC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTGATCAGCACTGCCAAGGGAAATAAAAGGACA
ATCAAAAGTAAACTGGGGGTCTCTGGTGACTATGGCAACTGGAGGAAATA
AGTAGTCTCCCAGGGGTGCTTCAGCTCAAGGCCTTGCCCTCACGGAGCCC
TGTGCACCCTTTGGGATTAAGAGACAGGAAGGACCTGAAAGTTTTGGTAA
TAGATGACCTAAAAATGTCCCTTCTAGATCTGTGGTAGTTTGGATCTGGA
GTATAGCTTAAAAGTTCCTGTGGCTGGGAGAAGCTGTCCGGTGAACTCCA
GTAGTCAGCCCATCTTCTATTCCCCAGCAGTGAGTTTACCACACTCAGCT
TTGGCCTTGGAGCCTGGGATCCATCCACACTAGGTCCCAAGGTTTGTGTA
GCAACCGTTTTACAGAATGACTCCCCAGCACCAAGGCTTATATGCTAAAG
GCTTGGCTGCCAACATGACGTATTACTGGGAAGTGGTGAAGCCTTTGTAA
GCTGAGACACCTTGGAAGCTTGTTTGATCTTTTCTATCTTGCGTTTGTAG
GTGTTTTTGAATACCTAACCCCCTTTCTGGATTCCCCTCCTTTTCACTTT
ATAAAAAGTGATTTTATTTTTCGTTTTTATTGTTCTCCAACTGATGTTTA
CATTTTTCCTTCGTTTTTTTCTTTTTATACCCCTCTTTCAGGGTCTTGCT
ATTTTATTCCATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_g02.b1 MSMg01no383_g02.b1 CHROMAT_FILE:
MSMg01no383_g02.b1 PHD_FILE: MSMg01no383_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:25 2005
         (602 letters)



>mm_chr14_24559765_24560766
          Length = 1002

 Score = 1006 bits (520), Expect = 0.0
 Identities = 529/532 (99%)
 Strand = Plus / Minus

                                                                       
Query: 16  gaattcagtgttagttaacagacttttagctacaattaagggagaacattttttccctca 75
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 gaattcagtgttagttaagagacttttagctacaattaagggagaacattttttccctca 473

                                                                       
Query: 76  caaggagaaggcagagctgctatgctagcatgttaaaggtggcatctctagatcttctca 135
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 472 caaggagaaggcagagctgctacgctagcatgttaaaggtggcatctctagatcttctca 413

                                                                       
Query: 136 actctttgagagataggcagcttcacaacgttttagaggtggaaacaagaggggaagggc 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 actctttgagagataggcagcttcacaacgttttagaggtggaaacaagaggggaagggc 353

                                                                       
Query: 196 aatatcagaccaagctattttgtcttccttgtctctcatacttctggacaaatctatgta 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 aatatcagaccaagctattttgtcttccttgtctctcatacttctggacaaatctatgta 293

                                                                       
Query: 256 tgaccttccatatttctagctgcaagagaggctgccatgtgattattgagtcttcaagtc 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tgaccttccatatttctagctgcaagagaggctgccatgtgattattgagtcttcaagtc 233

                                                                       
Query: 316 tttaggaaggacagctttgttgtggtatctccaacccaaataagccctggcaatgaaaac 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 tttaggaaggacagctttgttgtggtatctccaacccaaataagccctggcaatgaaaac 173

                                                                       
Query: 376 aggactcaattaatatgaatacatgctgtgcacctagattgggcagatctactgctacac 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 aggactcaattaatatgaatacatgctgtgcacctagattgggcagatctactgctacac 113

                                                                       
Query: 436 taccatcttccccacctatgagaccccttagaactttctccgagccatgtgcttctgctc 495
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 taccatcttccccatctatgagaccccttagaactttctccgagccatgtgcttctgctc 53

                                                               
Query: 496 tgcttttcttcttcttcctcttcttcctcctcctctctgtcctcttcctctt 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52  tgcttttcttcttcttcctcttcttcctcctcctctctgtcctcttcctctt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no383_g02.g1 MSMg01no383_g02.g1 CHROMAT_FILE:
MSMg01no383_g02.g1 PHD_FILE: MSMg01no383_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:25 2005
         (429 letters)



>mm_chr14_24384185_24385013
          Length = 829

 Score =  768 bits (397), Expect = 0.0
 Identities = 421/429 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgatcagcactgccaagggaaataaaaggacaatcaaaagtaaactgggggtctctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgatcagcactgccaagggaaataaaaggacaatcaaaagtaaactgggggtctctgg 260

                                                                       
Query: 61  tgactatggcaactggaggaaataagtagtctcccaggggtgcttcagctcaaggccttg 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 tgactatggcaactggaggaaataagtagtctctcaggggtgcttcagctcaaggccttg 320

                                                                       
Query: 121 ccctcacggagccctgtgcaccctttgggattaagagacaggaaggacctgaaagttttg 180
           || ||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 321 ccttcaaggagccctgtgcaccctttgggattaagagacaggagggacctgagagttttg 380

                                                                       
Query: 181 gtaatagatgacctaaaaatgtcccttctagatctgtggtagtttggatctggagtatag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaatagatgacctaaaaatgtcccttctagatctgtggtagtttggatctggagtatag 440

                                                                       
Query: 241 cttaaaagttcctgtggctgggagaagctgtccggtgaactccagtagtcagcccatctt 300
           ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 441 cttaaaagttcctgtggctgggagaagttgtctggtgaactccagtagtcagcccatctt 500

                                                                       
Query: 301 ctattccccagcagtgagtttaccacactcagctttggccttggagcctgggatccatcc 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 ctattccccagcagtgagtttaccacactcagctttggccctggagcctgggatccatcc 560

                                                                       
Query: 361 acactaggtcccaaggtttgtgtagcaaccgttttacagaatgactccccagcaccaagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acactaggtcccaaggtttgtgtagcaaccgttttacagaatgactccccagcaccaagg 620

                    
Query: 421 cttatatgc 429
           |||||||||
Sbjct: 621 cttatatgc 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)