BAC Information

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BAC

Clone NameMSMg01-383H17
Chromosome14 (Build37)
Map Location 57,046,958 - 57,047,483
singlet/doubletsinglet
Overlap geneRnf17
Upstream geneEG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a
Downstream geneCenpj, Parp4, LOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118, Zmym2, LOC100042817, B020004C17Rik, Gja3, Gjb2, LOC100043515, Gjb6, LOC668140, Cryl1, LOC668090, AU040096, Ift88
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383H17.T7 (MSMg01no383_h17.b1)MSMg01-383H17.TJ (MSMg01no383_h17.g1)
ACCAG487141AG487142
length761777
length of high quality
(start - end)		494 (42 - 535)442 (69 - 510)
definitionCHROMAT_FILE: MSMg01no383_h17.b1 PHD_FILE: MSMg01no383_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:32 2005CHROMAT_FILE: MSMg01no383_h17.g1 PHD_FILE: MSMg01no383_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTACAATATTAGTTAGGCTATGAAAAATATTTTTCTTTGTTAATTGCTGT
AAGAAAAACATGTGGATGCTTAGATCTGAAATAGCACTTGGAAAACTGGA
GCAAGAGGATCATGTTTGTGCTCAGCCTAGGCTATTACAGTGATTCTGTA
TCTTAACATGTACATGCGTGAGCGCGCGCGCACACACACACATGCACACA
AATGCATGGAGAGTGAGAGCTATGAGGGGCAGGGAACAAAGACAATGAAA
GAATCTTACTAACTTTAAAGTTAGTTTAGCTTTGCAATAAAAAAGCAGAT
AGACAAAATGTTGGAAGTATAAAAAGTTTTCACTTGAATTTAAGTCAAAA
TATGTCTTTTTGTTTCTTTCTATTGTGCCTCTTAGTGTTGCCCAGATTGT
TTTCAAATTCACAGAAACCCAACTCCATCAGCCTCCAGAATACTGTAATT
ATTGGCATGAGTCACTACACCTAGCTGGAAATCAGTCTTCCAGACTCACC
CACTACCTTCCAGGCTTGTTTTAAGGTAACATGTTACTTTAGTACAAACA
AAGGAACAGAGTGACCAGTTATGTTAAGAACTTCAGGTTTCTTCCATCTG
GATTTTTAAGTTATTACCTGCAATCCAGAGAACCAACAAATGTATTCCAC
TGGTTCCCCCCCCCCTCCGTTAGACTGTGCGGCCCCCTGTCTTGTTTGAT
CCCCTGGGCAN

ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATTATGGATGAATCAAATTGGGAAGAAGATAA
GGTGCTGGGGTTTATTGGGTCTAGACATTGGAAATGGCTTGAGTAGAATG
AGGTCAGGTAGACAGAGGGGACTGTCTGTTTTATGGTGTGTGTTTCCTGT
TCCACACTGGTAGTAAGTGGGTAGATAGGTCTGAGTGGAAAGGTTGGATA
CAATGTGAGAGAGTCCTGTGGTTTACCACAGAGGTATGAAGTATTCTGGG
CCAAGCCTGGAGCGACCCTGCAGTGCCTGCAAGAAAGGCCAGCCTTGGCT
GGTGCACTGGTTGTGAAACCCAGGCTAAATCTTGTAAGTTGGGGAAAATG
TATGCTTGCGGGGGTCATGGTTACTCACCAGACTAGACTCTGGAAGAGGA
TGTGGCAAGTCTGGGGATGGAGTTGGGTGGTAGAGGCAGAGCAAAAGGTC
CTGTGAGTGAATGAGATAGGGCATGTCCTGCCAGATGTCTAGAACTTGGC
TGCAGTGCTGGAGGAAAATTTGTTATTATGTTGCGCCTTGCGTTCTTTCG
CTTAAACTTATAGGTCTTGTTATATCTGGCCGCATTTGCTCTAATTTTGC
CTTTACTTATCGTGTCTCCCATTATCCATTCTGCCTTTTCCATTTTCTTC
CTTCTTTGTATTACCTTCTTTCACCCTCCTTCCTTTTTTTTATATTTTTC
ACTTTTCTTTCTTTTCCTTTATATATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_h17.b1 MSMg01no383_h17.b1 CHROMAT_FILE:
MSMg01no383_h17.b1 PHD_FILE: MSMg01no383_h17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:32 2005
         (494 letters)



>mm_chr14_57046669_57047562
          Length = 894

 Score =  803 bits (415), Expect = 0.0
 Identities = 482/527 (91%), Gaps = 38/527 (7%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctacaatattagttaggctatgaaaaatatttttctttgttaattgctgtaagaa 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 gaattctacaatatgagttaggctatgaaaaatatttttctttgttaattgctgtaagaa 756

                                                                       
Query: 65  aaacatgtggatgcttagatctgaaatagcacttggaaaactggagcaagaggatcatgt 124
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 aaacatgtggacgcttagatctgaaatagcacttggaaaactggagcaagaggatcatgt 696

                                                                       
Query: 125 ttgtgctcagcctaggctattacagtgattctgtatcttaacatgtacatgcgtgag--c 182
           ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||  |
Sbjct: 695 ttgtgctcagcctaggctattacagtgattctgtatcttaacatgcacgtgcgtgagcac 636

                                                                       
Query: 183 gcgcgcgcacacacac----------------------------------acatgcacac 208
           | ||||||||||||||                                  ||||||||||
Sbjct: 635 gagcgcgcacacacacacacacacacacacacacacacatacacacacatacatgcacac 576

                                                                       
Query: 209 aaatgcatggagagtgagagctatgaggggcagggaacaaagacaatgaaagaatcttac 268
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 aaatgcatggagagtgagagctatgaggggcagggaacaaagacaatgaaagaatcttac 516

                                                                       
Query: 269 taactttaaagttagtttagctttgcaataaaaaagcagatagacaaaatgttggaagta 328
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 515 taactttaaagttagtttagctttgcaataaaaaagcagatagacaaaatgttagaagta 456

                                                                       
Query: 329 taaaaagttttcacttgaatttaagtcaaaat-atgtctttttgtttctttctattgtgc 387
           |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 455 taaaaagttttcacttgaatttaagtcaaaatca-gtctttttgtttctttctattgtgc 397

                                                                       
Query: 388 ctcttagtgttgcccagattgttttcaaattcacagaaacccaactccatcagcctccag 447
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ctcttagtgttgcccagattgttttcaaattcacagaaacccaactccatcagcctccag 337

                                                          
Query: 448 aatactgtaattattggcatgagtcactacacctagctggaaatcag 494
           ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aatactgaaattattggcatgagtcactacacctagctggaaatcag 290


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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