BAC Information

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BAC

Clone NameMSMg01-383I10
Chromosome14 (Build37)
Map Location 91,701,526 - 91,702,037
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043336, EG639558
Downstream geneEG665377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383I10.T7 (MSMg01no383_i10.b1)MSMg01-383I10.TJ (MSMg01no383_i10.g1)
ACCAG487175AG487176
length767773
length of high quality
(start - end)		513 (65 - 577)501 (67 - 567)
definitionCHROMAT_FILE: MSMg01no383_i10.b1 PHD_FILE: MSMg01no383_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:35 2005CHROMAT_FILE: MSMg01no383_i10.g1 PHD_FILE: MSMg01no383_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTCTAT
TGACATATTCTAGAAGAAAGTACTAGTTCAACATTCATGACTGACTCCCA
TCTCATTTCAACCTATACACAAGTAAAGTTAAATATAATGTCCTGACACA
TGAGTAAGTTTGCTTTATGTGGATCTAATATTGAACAAACACCAAAGACA
TTTGATAATGTTAATATTTCTTTATATAATCAGAAAAAAAGCAAGTAGTT
TTTTATAAAGAAATTACCATCATAAGGTAAGAAAAGAGTAGTTTTTAAAA
TAAATCTCACCTGTTCAAATGTCCATTTGGTCACAACACACAGAAATAAT
GTTTAAATTATTTTTAAAATGTAGTCCTCTCAAGGATATAGCTTAGACAT
CTTAATAATATTCTAATTTAAAAAGTTTCATTCTTCACTTTTACAAAGTA
TAGTCCTTTTTTTCCCTTATTTTTTTTTTCTTCTTTATGAAAACTTCTGT
ACTTTTTCTCTCAAGGTCATATAGCCCTGTATCAGATAGCAGCAGAGCTT
CAGTAATAACACCAGCTGCCATCTTTGATTAATGTAAGTGAATGCCGTTT
TACAATTTTCATAGCTTCTCTCCTTTGCACCCATTTTGACAAGGAACAAT
GTTGGGTTCAATGCTGGATGCCCAAAAGTGCCCTAAAAGTATTTTATCGA
ATCCATTTGTCCGGCTTTCCCGGAAAAAAACTTTTCCCTCCCCAAATTTC
CGAAAGGGGAAAAAATA

GTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACCAGAGGAGAAGGAGAAAGAAGTAAGAAAGTCA
GATATAATAAAATAATTATGCACACCAAGACCAACTGAAAAGCAGTCACA
CACAAAGGAAATCTATACAGCCATTGTACAGGGCTAAGGTTATGAGAAAT
GGCAACAACTGTTTTTTACAAAGAGTTGAAATGGGCTACTGAGATGTCTC
CATCCCAGCCTACTGCAGGCATTTCAGAATGGTGGGTCCCTTGGAGGGAT
GTGTCTTCTCCTTCTCAAGTTCCCAGATGCCATCTTTTCTTACAAGGAGC
TGCCATGGTCTTCTGAGATGTCTCCATCCTTGCTGGCAGTCGTTATTGTG
GCATGCTGTCCCAAGCACTTTATAAATGATATTTTTCAGAATGTTAGCAG
AAAAGGGATATCAAATAAGTTACCAAATATAATAAAGACACTTGTTTATT
TTTTAATGCTTAGTTGGTTTGCATCTTGGGTTGGCTTCCTCCAAGTGTTG
GTGCCTTCAATTTGTCAAATGATAAGGCTTCAATGTCTCAATGATAGATA
ATTACTGACCCAAGGCAACTATGGATTTAGACTGGGCCCTTGTGTTGATT
TCCTTCCTCAAAGTTTATTTTCCAAATGGATTTTAACCCTAATTTAAAAT
AAAAATTAAAAAATTTTCCCACCCTCCAAAGGACTTTTATGGGATAGAAA
AAATTTTATTTATAATAACAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_i10.b1 MSMg01no383_i10.b1 CHROMAT_FILE:
MSMg01no383_i10.b1 PHD_FILE: MSMg01no383_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:35 2005
         (513 letters)



>mm_chr14_91701326_91702237
          Length = 912

 Score =  977 bits (505), Expect = 0.0
 Identities = 511/513 (99%), Gaps = 1/513 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaagtactagttcaacattcatgactgactcccatctcatttcaacctatacacaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 agaaagtactagttcaacattcatgactgactcccatctcatttcaacctatacacaaga 260

                                                                       
Query: 61  aaagttaaatataatgtcctgacacatgagtaagtttgctttatgtggatctaatattga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagttaaatataatgtcctgacacatgagtaagtttgctttatgtggatctaatattga 320

                                                                       
Query: 121 acaaacaccaaagacatttgataatgttaatatttctttatataatcagaaaaaaagcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaaacaccaaagacatttgataatgttaatatttctttatataatcagaaaaaaagcaa 380

                                                                       
Query: 181 gtagttttttataaagaaattaccatcataaggtaagaaaagagtagtttttaaaataaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtagttttttataaagaaattaccatcataaggtaagaaaagagtagtttttaaaataaa 440

                                                                       
Query: 241 tctcacctgttcaaatgtccatttggtcacaacacacagaaataatgtttaaattatttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctcacctgttcaaatgtccatttggtcacaacacacagaaataatgtttaaattatttt 500

                                                                       
Query: 301 taaaatgtagtcctctcaaggatatagcttagacatcttaataatattctaatttaaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaaatgtagtcctctcaaggatatagcttagacatcttaataatattctaatttaaaaa 560

                                                                       
Query: 361 gtttcattcttcacttttacaaagtatagtcctttttttcccttattttttttttcttct 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 gtttcattcttcacttttacaaagtatagtcctttttttcccttattttttttt-cttct 619

                                                                       
Query: 421 ttatgaaaacttctgtactttttctctcaaggtcatatagccctgtatcagatagcagca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttatgaaaacttctgtactttttctctcaaggtcatatagccctgtatcagatagcagca 679

                                            
Query: 481 gagcttcagtaataacaccagctgccatctttg 513
           |||||||||||||||||||||||||||||||||
Sbjct: 680 gagcttcagtaataacaccagctgccatctttg 712


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 912
Length adjustment: 10
Effective length of query: 503
Effective length of database: 902
Effective search space:   453706
Effective search space used:   453706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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