Query= MSMg01no383_l08.b1 MSMg01no383_l08.b1 CHROMAT_FILE:
MSMg01no383_l08.b1 PHD_FILE: MSMg01no383_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:49 2005
(515 letters)
>mm_chr14_78788904_78789818
Length = 915
Score = 876 bits (453), Expect = 0.0
Identities = 492/511 (96%), Gaps = 10/511 (1%)
Strand = Plus / Plus
Query: 5 gaattccaccctcatttaggtacagtttattatcagatgaactaaagcaagaatttatag 64
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaccctcagctaggtacagtttattatcagatgaactaaagcaagaatttatag 264
Query: 65 taaataacccacagcaagaactcttacttaattacagtgtacctttcttgctaactcaca 124
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 265 taaataacccacagcaagaactcttacttaatttcagtgtacctttcttgctaactcaca 324
Query: 125 atttcctcccgactaaggggtgtggccaagagcaagcttgccctgttcactgttgactta 184
|||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 325 atttcctcccgactaaggggtgtggccaagagcaagcttgccatgttcactgtt------ 378
Query: 185 tctagcggatacccttctggtccctgttaccctctcctgagcccccacacaccacaccaa 244
|||||||| |||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 379 ----gcggatacacttctggtccctgttaccctctcctgggcccccacacactacaccaa 434
Query: 245 catcgtcatatgctaccatgtcttagctacaagtgtggagaattctaggcctcactgcaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 catcgtcatatgctaccatgtcttagctacaagtgtggagaattctaggcctcactgcaa 494
Query: 305 ttacttaaaagtgaccatttttttaatgtgggattgtattttcttgattctaacaatgtc 364
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 495 ttacttaaaagtgaccattttttaaatgtgggattgtattttcttgattctaacaatgtc 554
Query: 365 taattctgtttacttttttcttaggtctaaccatggtatgttcttagttccaaccatgtc 424
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 taattctgtttactttcttcttaggtctaaccatggtatgttcttagttccaaccatgtc 614
Query: 425 tgttatttgctactttaactattccagctatataatgatacaactgtgtagagcccccag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tgttatttgctactttaactattccagctatataatgatacaactgtgtagagcccccag 674
Query: 485 agtgacacatggcaatttttcagtaagtgta 515
|||||||||||||||||||||||||||||||
Sbjct: 675 agtgacacatggcaatttttcagtaagtgta 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space: 457025
Effective search space used: 457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no383_l08.g1 MSMg01no383_l08.g1 CHROMAT_FILE:
MSMg01no383_l08.g1 PHD_FILE: MSMg01no383_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:49 2005
(486 letters)
>mm_chr14_78968438_78969319
Length = 882
Score = 866 bits (448), Expect = 0.0
Identities = 476/486 (97%), Gaps = 4/486 (0%)
Strand = Plus / Minus
Query: 1 ttgggtgttttcataagcttacatgttctgtcacctatgaaacttattccagctttccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ttgggtgttttcataagcttacatgttctgtcacctatgaaacttattccagctttccaa 529
Query: 61 acgcaaattcccacattttgttcccatttttttttcatatcagtttaataaccattttga 120
| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 528 atgcaaattcccacattttgttccca--tttttttcatatcagtttaataaccattttga 471
Query: 121 gtttctgcttgcacttgtaagacttgacatccaggaatttttcaaggtcttggctgagat 180
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 470 gtttctgcttgcacttgtaagacttgacatccaggaatttttcaaggtcgtggctgaga- 412
Query: 181 tcctagcctgagttctggggactggggtgattactgacaggaacttaccaatagaaggaa 240
||| |||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||
Sbjct: 411 tcccagcctgagttctggggactgaggtgattactgacagg-actcaccaatagaaggaa 353
Query: 241 tttcattttgtttcttaagggctttttgtattactaactcacattttgatagtctatcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tttcattttgtttcttaagggctttttgtattactaactcacattttgatagtctatcca 293
Query: 301 gtagatattatttccctttttctagaccatggcgtgtcagtgtcactcaatagaatcatc 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 292 gtagatattatttccctttttctagaccatggcgtgtcagtgtcgctcaatagaatcatc 233
Query: 361 aagtatttgaaagccaaaggtatacaagtcaaaaaagtaagaaaaagaaaagaaaagaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 aagtatttgaaagccaaaggtatacaagtcaaaaaagtaagaaaaagaaaagaaaagaaa 173
Query: 421 aaaaaaatctctgttttctggtcattatatgccaaaaatcaactgtaatatttgaaagtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 aaaaaaatctctgttttctggtcattatatgccaaaaatcaactgtaatatttgaaagtt 113
Query: 481 gtgtat 486
||||||
Sbjct: 112 gtgtat 107
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 882
Length adjustment: 10
Effective length of query: 476
Effective length of database: 872
Effective search space: 415072
Effective search space used: 415072
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
