BAC Information

Click to search

BAC

Clone NameMSMg01-384D12
Chromosome14 (Build37)
Map Location 51,841,035 - 51,841,424
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b, Pnp, LOC667034, LOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14
Downstream geneEar11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h, Chd8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384D12.T7 (MSMg01no384_d12.b1)MSMg01-384D12.TJ (MSMg01no384_d12.g1)
ACCAG487707AG487708
length768740
length of high quality
(start - end)		538 (34 - 571)513 (62 - 574)
definitionCHROMAT_FILE: MSMg01no384_d12.b1 PHD_FILE: MSMg01no384_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:28 2005CHROMAT_FILE: MSMg01no384_d12.g1 PHD_FILE: MSMg01no384_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:28 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGCACC
TTATGTGGTCAGGTGAGCTGGGAGCCCTGGCCATGGGGTCCAGGAAGGTG
CTGGGCAAGGGGCTGCTGGTGGCCCAACTAAAGTTAAGAGTTGAGTTTCC
CCAGATAAAACCGGTGACCCTGCTAGATTGGACAGAAAAAGAGACCTACA
GTGGCTTCCAGGCAGCCAAGCTATTCTGAAGAGCTTTTTGCTCTGCCTGC
CCCAAGGGGTCCAGGGGCATTGGGTGTCTTTTAGGGACAAAACCAGACAA
CCCCAGAAATGTCCCTCCAGCCCTTACTTAACTTTTTCCGTCCGTGGGGG
GATTTTTGAGAAACAGAGTGAGATAGTTATCCAGCTTGCAGATAATTAGA
AGGAAACTTTAAGGGTAGAGCACAATGTAAGTAAAGTTTAAGAAAATGCA
GAAATGTGCAAGAATGTGTTTGCCAATCACACCCACAGTGGTGGCTTTTT
AAATATATATATATATATATATATATATATATATATATATATATATATAT
ATATATATATATATATATANNNNNNNNNNNNNNNNNNNNTNNATNTTNNT
TATATAATTTTTATATAAATTATTTTTTTTTTAATTTATTTATTTTTTTT
ATTAAAAAAAAAATTAAATAATTTATATTTAATATTTTTTAATAATTTTT
NNNTTTAATAANAAAAANAATTTAATAAAAAAATTTATATTTTAAAATAT
TNATTTTATATTTTTTTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXACTCTTGCACTTGCGCATAAGGCTTGTTTACTAGTTAGG
CACAGTGGAAGCCAGCGCCATTTTATAATGATGATTGCTCACAGCACGGC
TCTCCACATTCCAGGAATAACATCACCTTGTTAATTGTTCTGGGTTCTTC
CAAGATCTGTAGCAATCCAATGTTTCCTCAGAGAATGTCTGCTCATTTAA
TTGAAGAAATCAGCTTCTTTTTACAAGGCACTACCTTTGGGTAGCTGAAA
AATTCTCTCTTTTTTGGGGGGGGGATGACTGCTTGGTAAAACACAACATC
CAGGTACCCTCTATTTTGGATTCAATATTTTCTACAAGAGTCTGCATCAT
TGACTCCCTCTTTCGTTTCTAGTATTCCATCTTAGGGAGGACAGTGGAGC
TAGAGAGATGGCTCAGTGGTTAAGTGCACTTGGCTGCTCTTCCAGAGGAT
TCGAGCTCCATCCACTCCCTGCACCCACATGACAGCTCACAATCACTTGT
TGCCTTGTTCTAGCCCCTGACGGTACTGCACACACGTGGTTCACACACAT
AAATGAGGGCACTATATCTATACCCATAAAATAATACCTTAATAAGGACC
GATCTGGTTTGACATTATTAGCACAACGTTTTGTTGTGCGGAATCTTTGT
GTATTCTTCGTCCTGTATTTGGGATTTTTTGTCCCTCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_d12.g1 MSMg01no384_d12.g1 CHROMAT_FILE:
MSMg01no384_d12.g1 PHD_FILE: MSMg01no384_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:28 2005
         (513 letters)



>mm_chr14_51840728_51841640
          Length = 913

 Score =  518 bits (268), Expect = e-151
 Identities = 365/404 (90%), Gaps = 18/404 (4%)
 Strand = Plus / Plus

                                                                       
Query: 108 aacatcaccttgttaattgttctgggttcttccaagatctgtagcaatccaatgtttcct 167
           |||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||| |
Sbjct: 308 aacatcaccttgttcattgttctgagttcttccaagatctgtagcaatccaaggtttctt 367

                                                                       
Query: 168 cagagaatgtctgctcatttaattgaagaaatcagcttctttttacaaggcactaccttt 227
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 cagagaatgtcttcttatttaattgaagaaatcagcttctttttacaaggcactaccttt 427

                                                                       
Query: 228 gggtagctgaaaaattctctct---tttttgggggggggatgactgct-tggtaaaacac 283
           |||||||||||||||||||| |   |||||||       ||||||||| || ||||||||
Sbjct: 428 gggtagctgaaaaattctctttatttttttgg-------atgactgctatg-taaaacac 479

                                                                       
Query: 284 aacatccaggtaccctctattttggattcaatattttctacaagagtctgcatcattgac 343
           |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 480 aacatccagggaccctctattttggattcagtattttctacaagagtctgcatcat-gac 538

                                                                       
Query: 344 tccctctttcgtttctagtattccatcttagggaggacagtggagctagagagatggctc 403
           ||||||||  |||||||||||||| |||||||||||||||||| ||| || |||||||||
Sbjct: 539 tccctcttaggtttctagtattccttcttagggaggacagtggggctgga-agatggctc 597

                                                                       
Query: 404 agtggttaagtgcacttggctgctcttccagaggattcgagctccatccactccctgcac 463
           ||| ||||||| || ||||||||||||||||||||||| | |||  |  |||||| ||||
Sbjct: 598 agtagttaagtacatttggctgctcttccagaggattcaatctc--t--actcccagcac 653

                                                       
Query: 464 ccacatgacagctcacaatcacttgttgccttgttctagcccct 507
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 acacatgacagctcacaatcacttgttgccttgttctagcccct 697


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |