BAC Information

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BAC

Clone NameMSMg01-384G22
Chromosome14 (Build37)
Map Location 20,830,962 - 20,831,454
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341, LOC667344, LOC619996, EG434616, LOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2
Downstream gene1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384G22.T7 (MSMg01no384_g22.b1)MSMg01-384G22.TJ (MSMg01no384_g22.g1)
ACCAG487870AG487871
length780759
length of high quality
(start - end)		509 (25 - 533)487 (62 - 548)
definitionCHROMAT_FILE: MSMg01no384_g22.b1 PHD_FILE: MSMg01no384_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:44 2005CHROMAT_FILE: MSMg01no384_g22.g1 PHD_FILE: MSMg01no384_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCGCTATACGACTCACTATTTCCAGAGGATCCGCGGAATTCCAGTGCTG
AGGAGTCTGGAGAGGATGGCCTCTGGGGCCTGTTGTCCAGCCAGCCTAAC
CCAGTCCTCCAGTCCTCCAGCCAGCCTAACCTAGTCCTCCAGCTTCAGGG
CAGCGGGGGCCTGTCTCAAAGAGTGAAGCTGGGGCCTCTTGCGGAGGAAC
TGAGTTCAGTTCCTAGCATCTACATGGAGGTTACAACTGCCTGTTCCAGG
GAATCCAGTGCCCTTTCTGGCTTCCATGGGCTCCTGCACACACATGCTGC
ACATACACTCACAAAGGCCCACGCTGACACATAAATAAAAATAAACAAAA
TAAGTGGAGAATACCTAAGGAATGGCACTTGAGGCTGACCTCTGACCTCC
ATGCATGCATATACTGAGAGAGAGAGAGAGAGAGAGCACTTTGAATAAAG
ATCAATTCATCTTAGTGTATGCTTCAGTGTGTTTTGTGAGGCAGTGAAGT
GGAAATAAGAGGAGAGAGGCCCCTTTCCTTCCCAGGAAGAGTTCAGCTGC
CAGGGAAGTGAAATGGCAGAGATTTTTCAGGAGAATCATGTGATCGATCG
CCTAACCGCTGCTTTCCCCATGTTGATTGAAGGGGTTACACCCCATGTAG
GCCCCGAACCTTATTATATAGGGGGGGGAGTCCCCCCCATGATAAGGCCT
GGGGCTGGCTTGGGAAAAAAAATTGGGTGGCCCCCCACACCACTTGAAAG
ATGGTGAAATTGGGGCGGCAACCCCACCCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTGACTTAGTAGGCTTGGGTAGAACTGGAGAGCATCTGCC
TAGGGTTTGTTGTTTGTTTTGGTTTTTTTTGACATTTTCTTTTGTGTGTA
GAGTGTTTTGCCTTGAGTTTTTCCTTTGGAAGAGCATCCTTTGAGAACTC
CTGGCCTAATGTATGAGCCTGATATTTTCCAAAGTCATCTTCATGTAAGA
TTTACATGGGCAGCTTCAAAAGTGCCTGTGCCTATGTCCTGCTCCCACAA
GTATCTATCCTCTTGTCAGCCTTCCCTGAAGGTAAGTAAGATCTGCTTAT
AAATACTTACCCTCATGTGTGACTGGAGAATGCTATGCAGCCTTCATATC
CTATGAATCATTCTATTAATACTTATTTATCTGTTTTTAAAAAGGAATCC
TTCATTTCCTGTTGCCTCCATTTCTGGCCTGTCTCTTGCCTTCACTCACA
ATTCCAAAACATCCTCATTCTATTTCTCCTCCTTAAACTCTCCGGATGAC
ATCACGTCCTATTTCATGACAGAGCGTAAATTTTCTCCGTCACGAACATC
CCTGTATTTCTTTCCGCCAACCAAAAGTAATATCTCTAGCAGTTGAATTT
CTTTTCGTTTCTCCCCTTATCTCAAAGGGAGCGGCACCCTTTCCCGGGCT
AAGCAGAACCCCTCTTTTATCCTGGATGTTACCGGACTCGGACGGCCCAC
CTTTTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_g22.g1 MSMg01no384_g22.g1 CHROMAT_FILE:
MSMg01no384_g22.g1 PHD_FILE: MSMg01no384_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:44 2005
         (487 letters)



>mm_chr14_20830762_20831654
          Length = 893

 Score =  849 bits (439), Expect = 0.0
 Identities = 478/493 (96%), Gaps = 6/493 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgacttagtaggcttgggtagaactggagagcatctgcctagggtttgttgtttgttttg 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgacttagtaggcttgggtggaactggagagcatctgcctagggtttgttgtttgttttg 260

                                                                       
Query: 61  ----gtttt-ttttgacattttcttttgtgtgtagagtgttttgccttgagtttttcctt 115
               ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttgttttgttttgacattttcttttgtgtgtagagtgttttgccttgagtttttcctt 320

                                                                       
Query: 116 tggaagagcatcctttgagaactcctggcctaatgtatgagcctgatattttccaaagtc 175
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggagagcatcctttgagaactcctggcctaatgtatgagcctgatattttccaaagtc 380

                                                                       
Query: 176 atcttcatgtaagatttacatgggcagcttcaaaagtgcctgtgcctatgtcctgctccc 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcttcatgtaagatttacatgggcagcttcaaaagtgcctgtgcctatgtcctgctccc 440

                                                                       
Query: 236 acaagtatctatcctcttgtcagccttccctgaaggtaagtaagatctgcttataaatac 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaagtatctatcctcttgtcagccttccctgaaggtaagtaagatctgcttataaatac 500

                                                                       
Query: 296 ttaccctcatgtgtgactggagaatgctatgcagccttcatatcctatgaatcattctat 355
           ||||||||||||||||||||||||  || |||||||||||||||||||||||||||||||
Sbjct: 501 ttaccctcatgtgtgactggagaacactgtgcagccttcatatcctatgaatcattctat 560

                                                                       
Query: 356 taatacttatttatctgttttt-aaaaaggaatccttcatttcctgttgcctccatttct 414
           |||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||
Sbjct: 561 taatacttatttatctgttttttaaaaaggaatccttcgcttcctgttgcctccatttct 620

                                                                       
Query: 415 ggcctgtctcttgccttcactcacaattccaaaacatcctcattctatttctcctcctta 474
           ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggcctgtctctagccttcattcacaattccaaaacatcctcattctatttctcctcctta 680

                        
Query: 475 aactctccggatg 487
           |||||||||||||
Sbjct: 681 aactctccggatg 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 893
Length adjustment: 10
Effective length of query: 477
Effective length of database: 883
Effective search space:   421191
Effective search space used:   421191
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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