Query= MSMg01no384_j12.b1 MSMg01no384_j12.b1 CHROMAT_FILE:
MSMg01no384_j12.b1 PHD_FILE: MSMg01no384_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:55 2005
(565 letters)
>mm_chr14_85888697_85889664
Length = 968
Score = 1019 bits (527), Expect = 0.0
Identities = 555/569 (97%), Gaps = 10/569 (1%)
Strand = Plus / Plus
Query: 5 gaattccttactttatgcttaattttcaaatagtataagttaaatgcttaatttaacatc 64
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttacattctgcttaattttcaaatagtataagttaaatgcttaatttaacatc 264
Query: 65 ttggaaattctgaggctaaatgtttgaaagaagctgacttataaccaagacgggatgtga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttggaaattctgaggctaaatgtttgaaagaagctgacttataaccaagacgggatgtga 324
Query: 125 cgtgtggccttctgattgagcacgtcatggtatctgtgacagacaaatgtgtgcttcatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cgtgtggccttctgattgagcacgtcatggtatctgtgacagacaaatgtgtgcttcatt 384
Query: 185 gtaagatattactaacctggagtatcttgtttgtcttaacaatttagattgaattttaca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtaagatattactaacctggagtatcttgtttgtcttaacaatttagattgaattttaca 444
Query: 245 tttttccttccaccgtaaaatgagaaggcaactgaaaaatgtgctctgttttaccatcac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttttccttccaccgtaaaatgagaaggcaactgaaaaatgtgctctgttttaccatcac 504
Query: 305 agtggtttccacctgaaaatcaaaaaaagagtagagacattagagaagctaaaaggagga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agtggtttccacctgaaaatcaaaaaaagagtagagacattagagaagctaaaaggagga 564
Query: 365 agaaaaagggaggagttggggaaggagagttaaaaaaaaat---gatgaggtaaagaaag 421
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 565 agaaaaagggaggagttggggaaggagagttaaaaaaaaaaaaagatgaggtaaagaaag 624
Query: 422 gaagggtaaataaagaacctgtattatagtttttgtaaaagtagtaaaaatagttagtct 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaagggtaaataaagaacctgtattatagtttttgtaaaagtagtaaaaatagttagtct 684
Query: 482 gaaaattccaggtattttgataaagtattacttttagttttaataaaataaa-att---- 536
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 685 gaaaattccaggtattttgataaagtattacttttagttttaataaaatatatattgtat 744
Query: 537 --ctctctctctctctctctctctctctc 563
|||||||||||||||||||||||||||
Sbjct: 745 ttctctctctctctctctctctctctctc 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 968
Length adjustment: 10
Effective length of query: 555
Effective length of database: 958
Effective search space: 531690
Effective search space used: 531690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_j12.g1 MSMg01no384_j12.g1 CHROMAT_FILE:
MSMg01no384_j12.g1 PHD_FILE: MSMg01no384_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:55 2005
(599 letters)
>mm_chr14_86093252_86094250
Length = 999
Score = 1135 bits (587), Expect = 0.0
Identities = 596/599 (99%)
Strand = Plus / Minus
Query: 1 ttggtcacctcttttactcacagttgattagggggatggattgatcaggtgataaataaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ttggtcacctcttttactcacagttgattagggggatggattgatcaggtgataaataaa 740
Query: 61 tagaggtactagaaaataatcaagcaacagttaataaaaggttaccttaggtcaataaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tagaggtactagaaaataatcaagcaacagttaataaaaggttaccttaggtcaataaaa 680
Query: 121 gacagaggagtgaacataattaatgtctagcatggctattagagtaagcaaaagaaaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 679 gacagaggagtgaacataattaatgtctagcatggctattagagtaatcaaaagaaaaaa 620
Query: 181 gaatgtcacaaagataaagagaaatatcaaagtacaattatggaaaattgttagttggtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gaatgtcacaaagataaagagaaatatcaaagtacaattatggaaaattgttagttggtc 560
Query: 241 atgtattcagatatttaagagtaatgcattttacttttgacagcctcaatacaatagcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 atgtattcagatatttaagagtaatgcattttacttttgacagcctcaatacaatagcta 500
Query: 301 tacttacatacatggaaatgtagtgaacttaattatttggagtttaaccttaccatctac 360
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 499 tacttacatacatggaaatgtagtgaacttaattatttggagtttgacctttccatctac 440
Query: 361 aatgttgaaacactgcaaataatagtatcaaatatcccacatgtgattaaagctgctaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aatgttgaaacactgcaaataatagtatcaaatatcccacatgtgattaaagctgctaaa 380
Query: 421 gccacaaaacatccagcttagtgataaaagatagggactcaacaataacactaaatttgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gccacaaaacatccagcttagtgataaaagatagggactcaacaataacactaaatttgt 320
Query: 481 ttttatttattggtgacaaatgctaagccaatgaaagacactaaaataaagaaagaattc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ttttatttattggtgacaaatgctaagccaatgaaagacactaaaataaagaaagaattc 260
Query: 541 ctttaaaataaacaagacaataatactataaaaggaaagataatgtagatttatatggt 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ctttaaaataaacaagacaataatactataaaaggaaagataatgtagatttatatggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
