BAC Information

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BAC

Clone NameMSMg01-385A06
Chromosome14 (Build37)
Map Location 102,633,921 - 102,634,315
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382936, Tbc1d4, Commd6, Uchl3, Lmo7, LOC100043795, LOC545567
Downstream geneLOC669278, Kctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385A06.T7 (MSMg01no385_a06.b1)MSMg01-385A06.TJ (MSMg01no385_a06.g1)
ACCAG488315AG488316
length756771
length of high quality
(start - end)
536 (26 - 561)394 (55 - 448)
definitionCHROMAT_FILE: MSMg01no385_a06.b1 PHD_FILE: MSMg01no385_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:28 2005CHROMAT_FILE: MSMg01no385_a06.g1 PHD_FILE: MSMg01no385_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATACGACTCCTATATTCAGAGGATCCGCGGAATTCTTTGTTCAGCTCT
GAGCCCCATTTTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTG
AGTTCTTTATATATATTGGATATTAGTCCCCTATCCGATTTGGGATAGGT
AAAGATCCTTTCCCAATCTGTTGGTGGTGTTTTTGTCTTATTGATGGTGT
CTTTTGCTTTGCAGAAGCTTTGCAATTTTATGAGGTCCCATTTATCGATT
CTTGATCTTACAGCACAAGCCATTGCTGTACTATTCAGGAATTTTTCCCC
TGTACCCATATCTTCGAGGCTTTTCCCTACTTTCTCCTCTATAAGTTTCA
GTGTCTCTGGTTTTATGTGGAGTTCGTTAATCCACTTAGATTTGACCTTA
GTACAAGGAGATAGAAATGGATCAATTCGCATTCTTCTACATGATAACAA
CCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTTTTCCACTGGA
TGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGTGTGGGTTC
ATCTCTGGGCCTTCCATTCTGTTCCATTGGTCTACTTGTCTGTCACTATA
CCAGTACCTTGCAGTTTTGAACCCATTGCTCTGTAAGACAGCTTTAGGTC
TTGCTTTGGGTTTTCTCCATAGGTTCTCTTATCTTTTATAACAGTTTTGT
CTATTCTCCGTTCTTTTTTTTTTCTTATTGACTCTGTCTATTGTCTATTT
TCTTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCAACTAGTTCATTTTGTCTCTTTCTGGGCTTTTTTACACTCTAGAT
GTGAACTCTGTCACTGACTTGTATCCTCATGGGCTCTATTTGAGAGAGAT
CTAGAATGATGGGTTTGATTGATCGTGTATTTGAACATTCAGAAGCCAAC
AATAACCTTCTTTTTACTCCATCTGTATCCTGTGAGTCAGTTTTTTCACT
TCAGTGATATGAAGCTGATGAGGAAGTGCCCAAGAACAACTTGTTATGGA
GGAGTTTGGAGTTTTCAGAAGTCCTGATGTGACCCCACATCACTGGTGTT
CTTCTGGCTGGGTAAATATCACATCAAAAATTCATGAACACATGGAAATT
CATCAGGAATTGTGTGCATGTTCCCTGCCTAACAGCTGGAGGATCCACAA
GGTACAGATTTCTGTGGAAATGTTATTTTTTTCATACTGTATTCCTTTAC
CTCATTTTTAAAAATTGATAATTACTGAGGCCCCGCGAACCTCTTGAATT
ATGGACCCATAATGGCTGACAAATTTGTCATCCTTATTTTTTTTTACATG
TTTGTACATTTCTGGTATTTTTTTCCCCTTTAATCTCTGCGATTCTTATT
CTTGTTGTCGCGCCTTCCCCTGGTTTTTTTTTTTTTCTTTCTCCTTTCTC
TTATCTCCTCTTCCTAATTTTTTTTTCTACCCGTTATGCATCCTTGTTAC
TTCTCTTCTTTTTTTCCTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_a06.g1 MSMg01no385_a06.g1 CHROMAT_FILE:
MSMg01no385_a06.g1 PHD_FILE: MSMg01no385_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:28 2005
         (394 letters)



>mm_chr14_102633721_102634515
          Length = 795

 Score =  696 bits (360), Expect = 0.0
 Identities = 387/396 (97%), Gaps = 3/396 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caactagttcattttgtctctttctgggc-ttttttaca-ctctagatgtgaactctgtc 58
           ||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||| |
Sbjct: 201 caactagttcattttgtctctttctgggctttttttacacct-tagatgtgaactctgcc 259

                                                                       
Query: 59  actgacttgtatcctcatgggctctatttgagagagatctagaatgatgggtttgattga 118
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 260 actgacttgtatcctcatgggctctatttgagagagatctagaatgatgagtttgattga 319

                                                                       
Query: 119 tcgtgtatttgaacattcagaagccaacaataaccttctttttactccatctgtatcctg 178
           || ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 320 tcatgtatttgaacgttcagaagccaacaataaccttctttttacttcatctgtatcctg 379

                                                                       
Query: 179 tgagtcagttttttcacttcagtgatatgaagctgatgaggaagtgcccaagaacaactt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgagtcagttttttcacttcagtgatatgaagctgatgaggaagtgcccaagaacaactt 439

                                                                       
Query: 239 gttatggaggagtttggagttttcagaagtcctgatgtgaccccacatcactggtgttct 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gttatggaggagtttggagttttcagaagtcctgatgtgaccccacatcactggtgttct 499

                                                                       
Query: 299 tctggctgggtaaatatcacatcaaaaattcatgaacacatggaaattcatcaggaattg 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tctggctgggtaaatatcacatcaaaaattcatgaacacatggaaattcatcaggaattg 559

                                               
Query: 359 tgtgcatgttccctgcctaacagctggaggatccac 394
           |||||| |||||||||||||||||||||||||||||
Sbjct: 560 tgtgcaagttccctgcctaacagctggaggatccac 595


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 795
Length adjustment: 9
Effective length of query: 385
Effective length of database: 786
Effective search space:   302610
Effective search space used:   302610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)