BAC Information

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BAC

Clone NameMSMg01-385E05
Chromosome14 (Build37)
Map Location 92,279,763 - 92,280,291
singlet/doubletsinglet
Overlap genenone
Upstream geneEG639558
Downstream geneEG665377, LOC638252
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385E05.T7 (MSMg01no385_e05.b1)MSMg01-385E05.TJ (MSMg01no385_e05.g1)
ACCAG488504AG488505
length761769
length of high quality
(start - end)
550 (28 - 577)532 (58 - 589)
definitionCHROMAT_FILE: MSMg01no385_e05.b1 PHD_FILE: MSMg01no385_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:47 2005CHROMAT_FILE: MSMg01no385_e05.g1 PHD_FILE: MSMg01no385_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACCTGAGGAAT
ACCGAATGGCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATC
AGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAG
AATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTG
GAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAA
CCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACT
ACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCC
CAACAGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTT
ATAATAGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATG
GATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTA
AAAAGAATGAATTTATGANATTCCTAGCCAAATGGATGGACCTGGAGGGC
ATCATCCTGAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTA
TTCACTGGATAGTGGATATTACCCCCAACCTAGGATACCCAAATATAATA
TATTATTTGCTTAACCCCTGAACTCCCTGAGAATGAAAAATGAAGTGGGG
CACTAGGCCCCCCCTTAATTTTGGAAAAAACCCCCTTGTAAGGGGTTTTT
CAAACCACTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXATTTAGGTAATCCACCACATAAACTTACTCAAAGAAAATAATT
AAAGAAAATTGAGTCACTGTTACTCAATAGAACATCTATTTGAAAAATGA
ATCACTGAGGTTAGTAATAAGAAAGTCAAGAAACATTTTCATTGAAGGTC
TTTTAAGGAAAATTCAGACTTGATTTTGAAACTTTACTATTATTACTAGG
TTGTTTGCATCTTAAGGTACATATGGGTCACTGTGCATATGTGATGCCAA
AAAAAAAAAAAAAGTTACTGGAGTAGGTTTGCTCTGTTTGCCTATACATT
GATTGTAGGGTCCAAAGTCTGATCCAGTTTGAGCCATGAGCATTTTTATT
CTCTGAAACAACACTCATTAACAGCTACGTATGTATTGGCTACCCAGGTG
TGACAGAAACTAATTATCAGTCATATAATGTAGAGACCATTCTATAAATG
GAATACATATCAAACATAGAATATTTGCTTTCATTACTTATTCTAATTTT
TGCTTCCTATTTAAAAATATTATAATATTACTTATAAACATTTGATAAAT
ATGTAAAAGAAAATGATTTTTTATTACATATTTTCCTCAATTACATTTCC
CATGGCTATCCCAAATGTCCCCTCAAAAATTCCCCGCCGGCCAAAATTTT
CCCAAACCAACCTATTCCTATTTTTTTGGCCCCGGCGTTTTTCCCGTACC
GGGGCCTATTAATGTTACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_e05.g1 MSMg01no385_e05.g1 CHROMAT_FILE:
MSMg01no385_e05.g1 PHD_FILE: MSMg01no385_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:47 2005
         (532 letters)



>mm_chr14_92279563_92280491
          Length = 929

 Score = 1013 bits (524), Expect = 0.0
 Identities = 529/532 (99%), Gaps = 3/532 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttaggtaatccaccacataaacttactcaaagaaaataattaaagaaaattgagtcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttaggtaatccaccacataaacttactcaaagaaaataattaaagaaaattgagtcac 260

                                                                       
Query: 61  tgttactcaatagaacatctatttgaaaaatgaatcactgaggttagtaataagaaagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttactcaatagaacatctatttgaaaaatgaatcactgaggttagtaataagaaagtc 320

                                                                       
Query: 121 aagaaacattttcattgaaggtcttttaaggaaaattcagacttgattttgaaactttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaaacattttcattgaaggtcttttaaggaaaattcagacttgattttgaaactttac 380

                                                                       
Query: 181 tattattactaggttgtttgcatcttaaggtacatatgggtcactgtgcatatgtgatgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattattactaggttgtttgcatcttaaggtacatatgggtcactgtgcatatgtgatgc 440

                                                                       
Query: 241 caaaaaaaaaaaaaaagttactggagtaggtttgctctgtttgcctatacattgattgta 300
           |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaaaaaaaaaaa---gttactggagtaggtttgctctgtttgcctatacattgattgta 497

                                                                       
Query: 301 gggtccaaagtctgatccagtttgagccatgagcatttttattctctgaaacaacactca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gggtccaaagtctgatccagtttgagccatgagcatttttattctctgaaacaacactca 557

                                                                       
Query: 361 ttaacagctacgtatgtattggctacccaggtgtgacagaaactaattatcagtcatata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttaacagctacgtatgtattggctacccaggtgtgacagaaactaattatcagtcatata 617

                                                                       
Query: 421 atgtagagaccattctataaatggaatacatatcaaacatagaatatttgctttcattac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 atgtagagaccattctataaatggaatacatatcaaacatagaatatttgctttcattac 677

                                                               
Query: 481 ttattctaatttttgcttcctatttaaaaatattataatattacttataaac 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ttattctaatttttgcttcctatttaaaaatattataatattacttataaac 729


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 929
Length adjustment: 10
Effective length of query: 522
Effective length of database: 919
Effective search space:   479718
Effective search space used:   479718
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)