BAC Information

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BAC

Clone NameMSMg01-385G14
Chromosome14 (Build37)
Map Location 93,524,139 - 93,524,621
singlet/doubletsinglet
Overlap genePcdh9
Upstream geneLOC638252
Downstream geneLOC668566, LOC100043356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385G14.T7 (MSMg01no385_g14.b1)MSMg01-385G14.TJ (MSMg01no385_g14.g1)
ACCAG488618AG488619
length749732
length of high quality
(start - end)
503 (56 - 558)491 (65 - 555)
definitionCHROMAT_FILE: MSMg01no385_g14.b1 PHD_FILE: MSMg01no385_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:58 2005CHROMAT_FILE: MSMg01no385_g14.g1 PHD_FILE: MSMg01no385_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAANTCTTTGCT
TACATCAGACCTAACTGTATAATTCTTAATAGCAATGGGAGTACTGAAAC
GTGATAGAGTACTTGACAGTATATGAAATATTAATACAGCCCCCAAGGGA
ATCTGATTTTTGTTTCCAGGGCAATAAATAAATAAATAAATAAATAAATA
AATAAATAAATAAATAAATAAATAAATCAAACAAACGTACTGTTTATAAA
TGGCTGATATCTTTGTAATATCCAAAGATGAGGTACAGGACTGGTCTCAG
TAAATGATGAGTATAATAAGTTTTAATGCTTAAAATGATTGGTAACTCTA
AATTACATCCCTTATAGCTTGTAATTAGATGGATTAATAGCAGATCATCT
TGCTTTGAAAGCTATAGGTACAATGACATTTGTTAGATGCCATGCATTCT
CATGCTGCATAATGACTTTCATCTACACGGAAACCACAGCTACAACAACA
ATATTATGAACAAACGTGGCCCTCATGGACAAGATGAGAGTCATGTTGAT
GAAAGCCAAGCAGAAAGATTGTCTCTCTCAGTCACAGTGCTGCAGGATAA
ACTTAGAATAATAAAGATGTCTCTAGCCCACCTTTCATCCTTTACTGAGG
ACTGTTGTGAAGCAAGCCAGAAGTATCCCCGATTCCATGGGAGGGAATAT
TATTGGGGAGAATAATCCCCTTATAAAACAGAATTCTCCTCTTTTCTAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGCCAGGACTCCTGGACAACTGGCTCCTGTCACCTA
GCTACAGCCTCCCACAGCTCCACCCCCAACCCCCTGCAGAGAGGTATGTA
GTATCAATCACATTGGTAGCTGCGCCAAACCCTCCCACATGCAAATAAGG
TTTCCCCAAATCCTCAGTCCAAGCCAATGAGAAGTACCTGCTGTCAAATC
CTCAATCATCCCCAAAACTGTATGTAAGTCTGATCCAGGGAATAAAGGTG
TGCAAGAACTACTCTGTTTTCCAGAACCTTTGTCCTAAGAGCTGTGACAC
TTGGGGAGAGATTGACTCTCCTCCCTGGCTTCCCTTCGCCAGAGCCTTTG
CACCAGGCCTGGCCAGAGAGCTCCATGGAACATCTCTGGTACCCAGGCCC
ACAGACTGTAATTTCATTAGAAGTTCTCTAGACTGTCTTTAAATGTTAAA
ACATGAAATAGTTGTATTAAATTAGAACTAAATGAGCTGTATTAGACCTT
AATGTATTAATTGCTCATCTCTGGTTTAGAGGACATAAGTGGAGATTTGA
AACTGTGAAGAGGCCGCGAAGGTAGGCTTATACAGGGACTACGGTTTTTT
CTAGTTACTAAATTAATTTCCCAATGGCCTTTTAAAAAAAAAAAAATTCT
TTGCCTTGTGAAGTCACAATATTTTTTGCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_g14.b1 MSMg01no385_g14.b1 CHROMAT_FILE:
MSMg01no385_g14.b1 PHD_FILE: MSMg01no385_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:58 2005
         (503 letters)



>mm_chr14_93523759_93524661
          Length = 903

 Score =  837 bits (433), Expect = 0.0
 Identities = 476/503 (94%), Gaps = 20/503 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagacctaactgtataattcttaatagcaatgggagtactgaaacgtgatagagtacttg 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 cagacctaactgtatatttcttaatagcaatgggagtactgaaacgtgatagagtacttg 804

                                                                       
Query: 61  acagtatatgaaatattaatacagcccccaagggaatctgatttttgtttccagggcaat 120
           ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||   
Sbjct: 803 acagtatataaaatattaatacatcccccaagggaatctgatttttgtttccagggc--- 747

                                                                       
Query: 121 aaataaataaataaataaataaataaataaataaataaataaataaataaatcaaacaaa 180
                            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 -----------------aataaataaataaataaataaataaataaataaatcaaacaaa 704

                                                                       
Query: 181 cgtactgtttataaatggctgatatctttgtaatatccaaagatgaggtacaggactggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 cgtactgtttataaatggctgatatctttgtaatatccaaagatgaggtacaggactggt 644

                                                                       
Query: 241 ctcagtaaatgatgagtataataagttttaatgcttaaaatgattggtaactctaaatta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ctcagtaaatgatgagtataataagttttaatgcttaaaatgattggtaactctaaatta 584

                                                                       
Query: 301 catcccttatagcttgtaattagatggattaatagcagatcatcttgctttgaaagctat 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 583 catcccttatagcttgtaattagatggattaatagcagatcatctttctttgaaagctat 524

                                                                       
Query: 361 aggtacaatgacatttgttagatgccatgcattctcatgctgcataatgactttcatcta 420
           ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 523 aggtacaatgacatttgttagatgccatgcattctcatgttgcatactgactttcatcta 464

                                                                       
Query: 421 cacggaaaccacagctacaacaacaatattatgaacaaacgtggccctcatggacaagat 480
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 463 cacggaaaccacagctacaacaacaatattatgaacaaacgtggcccccatggacaagat 404

                                  
Query: 481 gagagtcatgttgatgaaagcca 503
           |||||||||||||||||||||||
Sbjct: 403 gagagtcatgttgatgaaagcca 381


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 9
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)