BAC Information

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BAC

Clone NameMSMg01-385K10
Chromosome14 (Build37)
Map Location 54,009,763 - 54,010,192
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308
Downstream geneLOC328483, EG667765, EG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777, A630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385K10.T7 (MSMg01no385_k10.b1)MSMg01-385K10.TJ (MSMg01no385_k10.g1)
ACCAG488802AG488803
length759760
length of high quality
(start - end)		539 (30 - 568)430 (60 - 489)
definitionCHROMAT_FILE: MSMg01no385_k10.b1 PHD_FILE: MSMg01no385_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:17 2005CHROMAT_FILE: MSMg01no385_k10.g1 PHD_FILE: MSMg01no385_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:17 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACCTGAGGA
ATACCGAATGGCAGAGAAACACCTGAAAAAATGTTCAACATCCTTAATCA
TCAGGGAAATGCAAATCAAAACAACACTGAGATTCCACTTCACTCCAGTC
AGAATGGCTAAGATGAAAAATTCAGGTGACAGCAGATGTTGGCGAGGATG
TGGAGAAAGGGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTAC
AACCACTCTGGAAATCAGTCTGGCGTTTCCTCAGAAAATTGGACATAGTA
CTACCGGAGGATCCCGCAATACCTCTCCTGGGCATATATCCAGAAGATGT
CCCAACCGGTAAGAAGAACACATGTCCCATTATGTTCATAGCAGCCTTGT
TTATAATAGCCAGAAGCTGGAAAGAGCCCAGATGCCCCTCAACAGAGGAA
TGGATACAGAAAATGTGGTACATTTACACAATGGAATACTACTCAGCTAT
TAAAAAAAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGG
GTATCATCCTGAATGAAGTAACCCAATCACAAAGGAAGTCGCACAATATG
TACTCACTGATAAGTGGATAATAGCCCAGAAACTTANGATACCCCAGATA
TAAGATACACCTTGCCAAACGCCTGAAATTCTAGAAGAACAAGAACCAAG
TGTGGGACCCTTTGCCCCCTCTCTAAAATGGGAACAAAACACCCTTGGTA
GGAGTTACG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCAGGCCTTTCTAGACTGTGGCCTAGATAAGCAGCCAGCCAG
GCCATCTGTAAGCCTTGAAGATGGATTGAGTGAGGGTGTCAAGGGTTAGA
GTTATGCTGTATGAAAACTTCATTCAGATTTCCATGCTGACATTTTGTAG
GTGGTTTTTCAGTCCAAGTGACTGCCTGTGTTTGATACCTGTTATTCCTG
AGAAAGAAGACAAAATCTGCTGAGTGTGTACACACAGGCTCACCCCTCTC
TCTGTTCCAACTTGGAGCAAATATCTCTTCAAAACTCCAACTAAACTCTC
AAGTGCTGTATTTCTTAGTAGTTATGTTAGAATAGTTTGCAGTTTGAATA
TTTCTTTGGTCACTATCATGAGTCCACAAGATGGCAGTGTTTTCTTTGGG
ATCGGGGTCTGGGGAGGAGGGTGCAGGAAGAGGAGGAGGNNNTTNNTTNN
NNNNNTNNNNTTNNCTTTTTTTTTTTTTTTTTTTTTNTTNTTTTNTTTTT
CTTTTTTTTTTTTTTTTTGTTNCCTNGTTNTTTTTTTTTTTGTTGTTGTT
TTNTGTTTTCTTTCTTTTTTCTCTCTTTTTTTCCTTTTTTTCTTTTTTTC
TTTGCTCTTTTGCGCCCCTCCCCTTTTTTTTGTTTTTTTTCTCTCTCCGT
TTTTTTCCTTCTTTTTTTTTTTCTTTTCCTCTTCTCTTTTTTCTTGTTTT
TTTTTCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_k10.g1 MSMg01no385_k10.g1 CHROMAT_FILE:
MSMg01no385_k10.g1 PHD_FILE: MSMg01no385_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:17 2005
         (430 letters)



>mm_chr14_54009563_54010392
          Length = 830

 Score =  824 bits (426), Expect = 0.0
 Identities = 429/430 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggcctttctagactgtggcctagataagcagccagccaggccatctgtaagccttgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 caggcctttctagactgtggcctagataagcagccagccaggccatctgtaagtcttgaa 260

                                                                       
Query: 61  gatggattgagtgagggtgtcaagggttagagttatgctgtatgaaaacttcattcagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatggattgagtgagggtgtcaagggttagagttatgctgtatgaaaacttcattcagat 320

                                                                       
Query: 121 ttccatgctgacattttgtaggtggtttttcagtccaagtgactgcctgtgtttgatacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccatgctgacattttgtaggtggtttttcagtccaagtgactgcctgtgtttgatacc 380

                                                                       
Query: 181 tgttattcctgagaaagaagacaaaatctgctgagtgtgtacacacaggctcacccctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttattcctgagaaagaagacaaaatctgctgagtgtgtacacacaggctcacccctct 440

                                                                       
Query: 241 ctctgttccaacttggagcaaatatctcttcaaaactccaactaaactctcaagtgctgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctgttccaacttggagcaaatatctcttcaaaactccaactaaactctcaagtgctgt 500

                                                                       
Query: 301 atttcttagtagttatgttagaatagtttgcagtttgaatatttctttggtcactatcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttcttagtagttatgttagaatagtttgcagtttgaatatttctttggtcactatcat 560

                                                                       
Query: 361 gagtccacaagatggcagtgttttctttgggatcggggtctggggaggagggtgcaggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagtccacaagatggcagtgttttctttgggatcggggtctggggaggagggtgcaggaa 620

                     
Query: 421 gaggaggagg 430
           ||||||||||
Sbjct: 621 gaggaggagg 630


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space:   345641
Effective search space used:   345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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