BAC Information

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BAC

Clone NameMSMg01-386D12
Chromosome14 (Build37)
Map Location 17,398,832 - 17,537,827
singlet/doubletdoublet
Overlap geneRarb
Upstream geneLOC667205, 1700062C10Rik, LOC667209, EG435389, Oxsm, Ngly1, Top2b
Downstream geneTpi-rs9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386D12.T7 (MSMg01no386_d12.b1)MSMg01-386D12.TJ (MSMg01no386_d12.g1)
ACCAG489237AG489238
length741737
length of high quality
(start - end)		696 (46 - 741)662 (72 - 733)
definitionCHROMAT_FILE: MSMg01no386_d12.b1 PHD_FILE: MSMg01no386_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:59 2005CHROMAT_FILE: MSMg01no386_d12.g1 PHD_FILE: MSMg01no386_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,537,136 - 17,537,827)(17,398,832 - 17,399,493)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTAATTATTCATCTTGTATATTCGTAAAACTAATGAACAGAAAA
TGAGAGGCAGGTCTGTCATTTGCCACTTCCCCTCTCTCTATGTGTGGCTG
AGTTCAGTCTCCATCAGCACTAAATTCCATTCAGAGTTCACAGCCATCAC
AAAAGCTAGTGCAGTTTTAGGTTAAGCATATTTTATCCATAAATTGCTAT
ATTTGGTTCTGGAGTTATTACTGCAGTTCCTTGGGGTGCATTTAAATCCA
CCTTATTGTAATAGATTATGGAATATAGTGGCTAATGTGTCTAATGTAAA
ATAAATGACTCTAATGATTTATGATGCGACACTTCAATTTTATTGAACAT
AAGGATCATTGTACTAAAATGGATGGTGTATTGCTGTTTTAGCATAAAAT
ACTGAATAACATATTCAAGAAAATGAATGGCTCGGCCAGTTCATAATATT
CTGCCCCTTCAGCTGAGAGGTCTTTAATAAGCAAGAGTGTCATTACGCTT
GGAAACGGATGTGTAGGTAATCTATTATCTAAAACAATGACAGGGACCTG
CCTCTGTTCTTATTATAGAGGGGATTCTGTGGGAGAAAAGCAGGATTCCT
TGGTCTTCTTGAAAGGTTGATTTCCACCCATCCACATACCAACTAAGTAG
TGTCTTATACAACTATAAATAGCTTGTACACATAGAAATTG

GACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGAGACATGCTTATGTAATGAGGTGTGT
GTCACTGACACACCCTAGTTTCCTCTAAGTTTGGAGGGAGCAGAGACAGT
GGCTAAAGGTTGCCAATACCCGGAGAGGTCAAATCAAGGCACCTCACACA
TGACAGACAGCCAAGAGTCTGAGCCAACAGGAACTCTGCAGGACCTAACC
CATGGACCCATGGAGAGGTGATGAGGCTATGCAGGTGCCGTCACGACTGT
GAGGACCATGTTAACTTTACTAGGGACAAGGCTTACTTGTCAGTGTCAGT
AATGTGTGCAAATATGAAACTTTGGTAAATGGCTGCCCCCGAATCAGGAC
CAGAGAACTGCCCAACCTTTGACAAGCAGGAAGGACTGTCATCTATGTGA
GGAGCAACAGACAGAGGCGAAGGGATAAAGTAAAAATTAGTCCCAAAAGT
AGCACCTGCTGTTCACCAGCATGCCCCTGCCCAGGCAACACACCAAACTC
AGTCAAGAAAACACAACCAGAGACCTCTGGATGTTCCCAAGAACAGAATC
TTATTTTACACGTTTGCCAGTCTTTCCACAGATCCTGCATGGCAGACATG
ATTGTCTCCAATTCATAGCTTCAGAAATCGAGCTCACATTANATCAAGCT
ATTTCTGATATCTCAGAACATTGGACAGATGTGGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_d12.b1 MSMg01no386_d12.b1 CHROMAT_FILE:
MSMg01no386_d12.b1 PHD_FILE: MSMg01no386_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:59 2005
         (696 letters)



>mm_chr14_17536932_17538027
          Length = 1096

 Score = 1323 bits (684), Expect = 0.0
 Identities = 690/692 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtaattattcatcttgtatattcgtaaaactaatgaacagaaaatgagaggca 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 gaattctgtaattattaatcttgtatattcgtaaaactaatgaacagaaaatgagaggca 837

                                                                       
Query: 65  ggtctgtcatttgccacttcccctctctctatgtgtggctgagttcagtctccatcagca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 ggtctgtcatttgccacttcccctctctctatgtgtggctgagttcagtctccatcagca 777

                                                                       
Query: 125 ctaaattccattcagagttcacagccatcacaaaagctagtgcagttttaggttaagcat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 ctaaattccattcagagttcacagccatcacaaaagctagtgcagttttaggttaagcat 717

                                                                       
Query: 185 attttatccataaattgctatatttggttctggagttattactgcagttccttggggtgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 attttatccataaattgctatatttggttctggagttattactgcagttccttggggtgc 657

                                                                       
Query: 245 atttaaatccaccttattgtaatagattatggaatatagtggctaatgtgtctaatgtaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 atttaaatccaccttattgtaatagattatggaatatagtggctaatgtgtctaatgtaa 597

                                                                       
Query: 305 aataaatgactctaatgatttatgatgcgacacttcaattttattgaacataaggatcat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 aataaatgactctaatgatttatgatgcgacacttcaattttattgaacataaggatcat 537

                                                                       
Query: 365 tgtactaaaatggatggtgtattgctgttttagcataaaatactgaataacatattcaag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tgtactaaaatggatggtgtattgctgttttagcataaaatactgaataacatattcaag 477

                                                                       
Query: 425 aaaatgaatggctcggccagttcataatattctgccccttcagctgagaggtctttaata 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 aaaatgaatggctcggccagttcataatattctgccccttcagctgagaggtctttaata 417

                                                                       
Query: 485 agcaagagtgtcattacgcttggaaacggatgtgtaggtaatctattatctaaaacaatg 544
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 416 agcaagagtgtcattacgcttggaaatggatgtgtaggtaatctattatctaaaacaatg 357

                                                                       
Query: 545 acagggacctgcctctgttcttattatagaggggattctgtgggagaaaagcaggattcc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 acagggacctgcctctgttcttattatagaggggattctgtgggagaaaagcaggattcc 297

                                                                       
Query: 605 ttggtcttcttgaaaggttgatttccacccatccacataccaactaagtagtgtcttata 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ttggtcttcttgaaaggttgatttccacccatccacataccaactaagtagtgtcttata 237

                                           
Query: 665 caactataaatagcttgtacacatagaaattg 696
           ||||||||||||||||||||||||||||||||
Sbjct: 236 caactataaatagcttgtacacatagaaattg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space:   744996
Effective search space used:   744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no386_d12.g1 MSMg01no386_d12.g1 CHROMAT_FILE:
MSMg01no386_d12.g1 PHD_FILE: MSMg01no386_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:59 2005
         (662 letters)



>mm_chr14_17398632_17399693
          Length = 1062

 Score = 1243 bits (643), Expect = 0.0
 Identities = 657/662 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagagacatgcttatgtaatgaggtgtgtgtcactgacacaccctagtttcctctaagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagagacatgcttatgtaatgaggtgtgtgtcactgacacaccctagtttcctctaagtt 260

                                                                       
Query: 61  tggagggagcagagacagtggctaaaggttgccaatacccggagaggtcaaatcaaggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggagggagcagagacagtggctaaaggttgccaatacccggagaggtcaaatcaaggca 320

                                                                       
Query: 121 cctcacacatgacagacagccaagagtctgagccaacaggaactctgcaggacctaaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctcacacatgacagacagccaagagtctgagccaacaggaactctgcaggacctaaccc 380

                                                                       
Query: 181 atggacccatggagaggtgatgaggctatgcaggtgccgtcacgactgtgaggaccatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggacccatggagaggtgatgaggctatgcaggtgccgtcacgactgtgaggaccatgt 440

                                                                       
Query: 241 taactttactagggacaaggcttacttgtcagtgtcagtaatgtgtgcaaatatgaaact 300
           ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 taactttacaagggacaaggcttacttgtcagtgtcagtaatgtgtgcaaatctgaaact 500

                                                                       
Query: 301 ttggtaaatggctgcccccgaatcaggaccagagaactgcccaacctttgacaagcagga 360
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 ttggtaaatggctgcccccgaatcagtaccagagaactgcccaacctttgacaagcagga 560

                                                                       
Query: 361 aggactgtcatctatgtgaggagcaacagacagaggcgaagggataaagtaaaaattagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggactgtcatctatgtgaggagcaacagacagaggcgaagggataaagtaaaaattagt 620

                                                                       
Query: 421 cccaaaagtagcacctgctgttcaccagcatgcccctgcccaggcaacacaccaaactca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cccaaaagtagcacctgctgttcaccagcatgcccctgcccaggcaacacaccaaactca 680

                                                                       
Query: 481 gtcaagaaaacacaaccagagacctctggatgttcccaagaacagaatcttattttacac 540
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtcaagaaagcacaaccagagacctctggatgttcccaagaacagaatcttattttacac 740

                                                                       
Query: 541 gtttgccagtctttccacagatcctgcatggcagacatgattgtctccaattcatagctt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtttgccagtctttccacagatcctgcatggcagacatgattgtctccaattcatagctt 800

                                                                       
Query: 601 cagaaatcgagctcacattanatcaagctatttctgatatctcagaacattggacagatg 660
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cagaaatcgagctcacattaaatcaagctatttctgatatctcagaacattggacagatg 860

             
Query: 661 tg 662
           ||
Sbjct: 861 tg 862


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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