BAC Information

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BAC

Clone NameMSMg01-386O17
Chromosome14 (Build37)
Map Location 18,785,671 - 18,785,851
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1, LOC627717, LOC238963, Ube2e2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386O17.T7 (MSMg01no386_o17.b1)MSMg01-386O17.TJ (MSMg01no386_o17.g1)
ACCAG489775AG489776
length762802
length of high quality
(start - end)		654 (48 - 701)181 (66 - 246)
definitionCHROMAT_FILE: MSMg01no386_o17.b1 PHD_FILE: MSMg01no386_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:49 2005CHROMAT_FILE: MSMg01no386_o17.g1 PHD_FILE: MSMg01no386_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAATACCGCG
GAATTCTCTGTTTAGTTCTCTACCCCATTTTTAATAGAGTTGTTTGGTTC
TCTGGAGTCTAACTTCTTGAGTTCTTTGTATATATTGGATATTAGCCCTC
TATCAGATGTATGATTGGTAAAGATCTTTCCCCAATCTGTTGGTTGCCAC
TTTGTCCTATTGACAGTGTCCTTTGCCTTACAAAAGCCTAGTAATTTTAT
GAGGTCCCATTTGTCGATTCTTTATCTTAGAATATAAGCCTTATCTTAGA
ATATAAGAAAATATATTTTCCGTTCAGGATATTTTCCCCAGTTCCCATGT
GTTCCAGGCTTTTCCCCACATTCTCTTCTATTAGTTTCAGTGTATCTGGT
TTTATGTGGAGGTCCTTGATCCACTTGGACTTGAACTTTGTACAGGGAGA
TAAGAATGGACCAATTTGCATTCTTCTACATGTTGACCACCAGGTGAACC
AACACCATTTGCTGAAAATGCTTTTTCCACTGGATGGTTTTAGCTTCTTT
GTCAAAGATAAAGTGACCAGAGGTATGTGGGTTCATTTTTGGGTCTTCAA
TTCTATTCGTTTTATCTACCTGCCTGCCATTGTACCAATATCATGCAGTT
TTTATCACTAGTGCTCTGTATTACAGCTTGAGGTCAGGGATGCTGATTCC
CCCTAGAAATTCTTTTATTGTTGAGAATAGCTTTTGTTATTCTAGGCTTT
TTGTTATTCCAN

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTGCCAAATATACTTTTTCTTGCCTTCCTGAGCTCCTGGGCCTTTGG
CTTGCCTGTCTAGCCTGTACCTGTGTACATGAATGAATGCCCATCATCTG
AGCAGAATCAAATCAAGCTCCATAGCTACCCATGCCCTCCCCTCTCTTCT
GTAACTTGGAGGGAAACAGGAGACCTGAAAGATGCCGGCAGTTGATGTGC
CTGCTGGGGCTGACTACCTTCCCCTAGCCCCACACTCCTTCCACCAAACA
AANCTCCCGACATGTCTCCTTTTTTCAAGGANCTAAGTGGTGGCAGCCAC
TCTTATATCTAGAGCAGAAGATAAAAAGGAACCACGAAAAAAGTGGTTTT
GTCANNNNNNNNTTGCAACCTTAAAAGGAACAAGCACATCTAGACCACCT
TTGTTCCCCTGTAAAAAAAAGAAAAACNTACAGNAAGGNNNCAGGCGAAA
AAGGATGTATGGGGTTAAAAAGTCGAGGGCCAAAAAACACTACAATGGCT
GCGACGACAGCGGGGNNNTTTCACGGTTTTGGGGTGAGTGGTCGGGGGGG
GCCTCTNNNNNNNNNAAAACCCCCCCNNNNNNNNNNNNNNNNNNNNNNNN
CCCCNNNNNCCGGGGGGCCCCCTCTTTTTTTCCACTCCCTCCCCCCATAA
AATATTCCCCCTCCCTTTTTAAAACCTGGGGGTGCTTCTGCGNNNNNNNN
TNNNGTGTGTTTTTTTTTTTTTACAGGNNNNNTNTTTAACAGGTTGGGGT
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_o17.g1 MSMg01no386_o17.g1 CHROMAT_FILE:
MSMg01no386_o17.g1 PHD_FILE: MSMg01no386_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:50 2005
         (181 letters)



>mm_chr14_18785471_18786051
          Length = 581

 Score =  335 bits (173), Expect = 1e-96
 Identities = 179/181 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttttcttgccttcctgagctcctgggcctttggcttgcctgtctagcctgtacctgtg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 ctttttcttgccttcctgagctcctgggcctttggcttgcctgtctagcctgtagctgtg 322

                                                                       
Query: 61  tacatgaatgaatgcccatcatctgagcagaatcaaatcaagctccatagctacccatgc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 tacatgaatgaatgcccatcatctgagcagaatcaaatcaagctccatagcttcccatgc 262

                                                                       
Query: 121 cctcccctctcttctgtaacttggagggaaacaggagacctgaaagatgccggcagttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctcccctctcttctgtaacttggagggaaacaggagacctgaaagatgccggcagttga 202

            
Query: 181 t 181
           |
Sbjct: 201 t 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 581
Length adjustment: 8
Effective length of query: 173
Effective length of database: 573
Effective search space:    99129
Effective search space used:    99129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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