BAC Information

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BAC

Clone NameMSMg01-387G20
Chromosome14 (Build37)
Map Location 19,362,146 - 19,362,566
singlet/doubletsinglet
Overlap genenone
Upstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1
Downstream geneLOC627717, LOC238963, Ube2e2, LOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341, LOC667344, LOC619996, EG434616, LOC675165, 1700110I01Rik, EG664814, LOC100039452
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387G20.T7 (MSMg01no387_g20.b1)MSMg01-387G20.TJ (MSMg01no387_g20.g1)
ACCAG490162AG490163
length849791
length of high quality
(start - end)		---421 (74 - 494)
definitionCHROMAT_FILE: MSMg01no387_g20.b1 PHD_FILE: MSMg01no387_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:28 2005CHROMAT_FILE: MSMg01no387_g20.g1 PHD_FILE: MSMg01no387_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCTTGTCGGCGCCAAACTACTCACTATTTCCAGAGTATCTGCGGAATTC
TTAATATTTACGATGGAAATGCTGAAGTGTAGTTCCCCATAATTGATGGC
TTCTAGCGGGACTGGTAGGACTCAGTTTTATTTAAGGCGCCGACCACTGA
GAGTTTGACAATGCTCTAGAGAGTATACTGATGATCCATAATGGACTGCT
TATTTTCATGTACCTATCTCTTCTATTCTTACTTTTATTCTCATTTTTTT
GGTATCTTACTACATATCTTTTGTTACCTAAGTGCCACTGCTTTTCCTAT
CTCCCTCCTTGTACTGTCTTTTCCTTCCCTTTCCCCCTAAGCGCCCTTTT
GTGTCACCCCATTATATTCTCTCTATGAACTTCCCCGGCTCCTCTTTTAT
TTCTCCTTGTTTCCTTTTCCCTCTCATTCTTTATACTTATATACCCACCC
TCCATTCTTCATTTTACATGCCGCTTTTCCCTCCCTTCTTTCTTCTTATT
TCTTTCCTTTCCCCCCTTTTTTCCCTCCATCCTCTTCCGCCCTATCCCTC
CCTTTTTTCCATTTTCCCCCCTTCTTCCTTTCTTTTTCTCTTACCCCTTT
TTTCCCTCCTTTTTTCTTACCTTTTTCTTTTCCCTCTATTCTTCCTTTCT
CCCCCTTTCTCTCCCTTTTTTCCCCCTTCCTCTCCCTTTTTCCCCCTTTT
CCCTCTCCTTTTCCCCCCTTTGCTTTCTCCCTTTCCCTCCCTTTCTCTTC
TCCTCCCCTTTTCTCTTTTTCTTTTTTCTCCCTTCTTTTCCCCTATTCTT
TATTTCAACCTCCTATTTTCCCCCTCCCTTCTTTTCTTCCCTTTTTTTT

GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCTGGAACAGGAGTTATAAGAGGTTAA
AAACCCTGACATCATGCTGATGTTGAACTCAAGTCCCCCGTTTCAGCAGC
ATTTACTGTTCAGCCATCTTTCAACCCTCCATTCCTATCTTGATTTCCCC
CTCCTTACTTAGTGAAGGCCCACATGTAAACAGACATGTTCACAAAGGAA
GGCATGGTATATCAACCAGATTCTGATGTACCCTGTTCTTGTGTTCAGGG
AATACTGTAGAGCCAACCCCAGCCTTGACTGGCACATTAGACAATGTGAA
CATGAAGGAGTCCTGGGGCCTGAAATGCAGGATGAAAATGGGGTTTAAAT
GAAGCCCAGGAGTTCCCCCATCAGTCCATGCTGGACAGTCTATGAAACAA
AACAGGAACAAAGCATACTGTGGGTCACTGTCTCACAAATGTTGTCCCAC
AATGCCACCTGAGACACCAAATAAATGTTTCAATGGTTAACTTGCATAAA
TGTGACCCCAATCTACCGGTTGACTAAAAAGAACTAAGAGAAAGTTTCAT
TAAGGCCCCCCTGTGATAACTATATTATGACCCCCTACGATAAACCAGGG
TCTGGTGGGTGAGTGTTATGTCTTCCTTTTAATTCCTTCTCCGACCCGCT
AGGCTTCACCCTCCCATTTTCAGAACACCCTTGGGTCACGAACCTCCACC
CCATCCCCTTTTTTTTTATCTCCCCCCTTAACCCCGCTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_g20.g1 MSMg01no387_g20.g1 CHROMAT_FILE:
MSMg01no387_g20.g1 PHD_FILE: MSMg01no387_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:29 2005
         (421 letters)



>mm_chr14_19361946_19362766
          Length = 821

 Score =  775 bits (401), Expect = 0.0
 Identities = 416/421 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctggaacaggagttataagaggttaaaaaccctgacatcatgctgatgttgaactcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctggaacaggagttataagaggttaaaaaccctgacatcatgctgatgttgaactcaag 260

                                                                       
Query: 61  tcccccgtttcagcagcatttactgttcagccatctttcaaccctccattcctatcttga 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcccctgtttcagcagcatttactgttcagccatctttcaaccctccattcctatcttga 320

                                                                       
Query: 121 tttccccctccttacttagtgaaggcccacatgtaaacagacatgttcacaaaggaaggc 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 tttccccctccttacttagtgaaggcccacgtgtaaacagacatgttcacaaaggaaggc 380

                                                                       
Query: 181 atggtatatcaaccagattctgatgtaccctgttcttgtgttcagggaatactgtagagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggtatatcaaccagattctgatgtaccctgttcttgtgttcagggaatactgtagagc 440

                                                                       
Query: 241 caaccccagccttgactggcacattagacaatgtgaacatgaaggagtcctggggcctga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaccccagccttgactggcacattagacaatgtgaacatgaaggagtcctggggcctga 500

                                                                       
Query: 301 aatgcaggatgaaaatggggtttaaatgaagcccaggagttcccccatcagtccatgctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatgcaggatgaaaatggggtttaaatgaagcccaggagttcccccatcagtccatgctg 560

                                                                       
Query: 361 gacagtctatgaaacaaaacaggaacaaagcatactgtgggtcactgtctcacaaatgtt 420
           ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||
Sbjct: 561 gacagtctatgaaacaaaacaggaagaaagcatactgtgggtcactatctcacaaaagtt 620

            
Query: 421 g 421
           |
Sbjct: 621 g 621


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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