BAC Information

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BAC

Clone NameMSMg01-387M21
Chromosome14 (Build37)
Map Location 23,640,763 - 23,641,208
singlet/doubletsinglet
Overlap gene1700112E06Rik
Upstream geneVdac2, Comtd1, Zfp503, EG665075, EG435392, LOC665068
Downstream geneKcnma1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387M21.T7 (MSMg01no387_m21.b1)MSMg01-387M21.TJ (MSMg01no387_m21.g1)
ACCAG490451AG490452
length789782
length of high quality
(start - end)
407 (67 - 473)446 (74 - 519)
definitionCHROMAT_FILE: MSMg01no387_m21.b1 PHD_FILE: MSMg01no387_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:58 2005CHROMAT_FILE: MSMg01no387_m21.g1 PHD_FILE: MSMg01no387_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTATCATACCTTCAAAGAGGACCTAATTCCAATATTCCTCAAACTATTC
CACTAAATAGAAACAGAAGGTATTCTATACAATTTGTTCTATGAAGCCAC
AATTACTCTGATACCTAAACCACACAACGACCCAACAAAGAAAGAGAACT
TCAAACCAAATTCCCTTATGAATATCGATGCAAAAATACTCAATAAAATT
CTCAAAAATAAAATCCAAGAACCCATCAAAATGATCATCCATCATGATCA
AGTAGGCTTCATTCCAGGGATGCAGGGATGGTTCAATATACAGAAATTCA
TCAACGTAATCCACTATGTAAACAAACTCAAAGACAAAAACCACATGATC
ATCTCATTAGATGCTGAGAAGGGATTTGATAAAATCTAACACCCATTCAT
GATAAAAATCTTGGAAATATCAGGAATTCAAGGTCCATACCTAAATATAC
CCAAACTGTATACAGCAAACCAATAGTCCACATTCAATTAAATGCGACAG
AAACTGGTATGCCATCCCCCCTAAACCCCCGGACCGGACCAAGCTTGCCC
CTCCCCCCCCCTACCTCAAAAACCTACTTCCCCCCCCACCCCTTCCCCCA
CATACCCTGGCGTCCCCAACCCTAATTACTTTTTCCCCCCCATCGCTCCC
CCCCGGCTCTCTCTTTCTTTATCGCCCAAATTTCCCCAAATTACCCTTTC
CCCCCTACTATCCCCCTCCCGCTTTCCACCCCCCCTCCT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTTACTCCTTGATTCCTAATGTGTTT
CCTCCTTTGTTAACATGTTTGCCCTGCAAGCACAGGGAGGTGAGTTTGAT
TCCTAGAATCCATATTTAAAGAAGCCCAGAGAACACAATGTCACATACTT
GAAATCCTATCACTGGAGAGACAGAGGTAGAAAGACCCATCAGGCTTCCC
GGCCAGCCAAATAAACCTACAAGGTGAATTCCTAGCCAGTCAACAGTAGT
CTTCTTTCCTAAAGACTAGATACCATCTTTTCATACCATCTGGATGGTAT
CTGAGGAACCTGGGAGGTTGATTTTTCTGGCTTCTACATATAGAATATAT
TTGTCTCCTTTGTACGTAATTTATTGGGGGTGTTCATGATATAAATCTGC
TAGTTTTTGTTACCTAATATTTATATTTTTCCATTTTTTATTCCTTTGCA
TAAGCATCTGCTAACCATGTTTTANAAGCTACTGCTCTGGATGAGNTCTT
TATACTTCTTGCTCTATGAGTTGATTAAAAAGCAGCACACCCAAAACCAG
AGCCCCATCATTTCTTTCCTGGACCTTGTCTTCACTCCCCCCCAGCCCCC
ATAAGTATCTGTGAACTGCTGGTTCCCACCAAAAGCCCCTCGGGGGTACC
GGGATAAATCTAACCCCCCTCATTCGAAAAAACCTCAAGGGATGTGTTTC
CGCTTTGGGTTTTTTAGCCATTCTTTTCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_m21.g1 MSMg01no387_m21.g1 CHROMAT_FILE:
MSMg01no387_m21.g1 PHD_FILE: MSMg01no387_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:58 2005
         (446 letters)



>mm_chr14_23640563_23641408
          Length = 846

 Score =  855 bits (442), Expect = 0.0
 Identities = 445/446 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttactccttgattcctaatgtgtttcctcctttgttaacatgtttgccctgcaagcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttactccttgattcctaatgtgtttcctcctttgttaacatgtttgccctgcaagcac 260

                                                                       
Query: 61  agggaggtgagtttgattcctagaatccatatttaaagaagcccagagaacacaatgtca 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggaggtgagtttgattcctagaatccatatttaaagaagcccagagaacacaatgtca 320

                                                                       
Query: 121 catacttgaaatcctatcactggagagacagaggtagaaagacccatcaggcttcccggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catacttgaaatcctatcactggagagacagaggtagaaagacccatcaggcttcccggc 380

                                                                       
Query: 181 cagccaaataaacctacaaggtgaattcctagccagtcaacagtagtcttctttcctaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagccaaataaacctacaaggtgaattcctagccagtcaacagtagtcttctttcctaaa 440

                                                                       
Query: 241 gactagataccatcttttcataccatctggatggtatctgaggaacctgggaggttgatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gactagataccatcttttcataccatctggatggtatctgaggaacctgggaggttgatt 500

                                                                       
Query: 301 tttctggcttctacatatagaatatatttgtctcctttgtacgtaatttattgggggtgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttctggcttctacatatagaatatatttgtctcctttgtacgtaatttattgggggtgt 560

                                                                       
Query: 361 tcatgatataaatctgctagtttttgttacctaatatttatatttttccattttttattc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcatgatataaatctgctagtttttgttacctaatatttatatttttccattttttattc 620

                                     
Query: 421 ctttgcataagcatctgctaaccatg 446
           ||||||||||||||||||||||||||
Sbjct: 621 ctttgcataagcatctgctaaccatg 646


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)