BAC Information

Click to search

BAC

Clone NameMSMg01-388C03
Chromosome14 (Build37)
Map Location 107,724,879 - 107,725,313
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043476, LOC100043809, LOC668736, EG668738, EG668739, LOC621487, EG668743, LOC100043811, LOC621499, LOC100043814, EG668742, LOC668748
Downstream geneLOC668752, EG668754, LOC668757
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388C03.T7 (MSMg01no388_c03.b1)MSMg01-388C03.TJ (MSMg01no388_c03.g1)
ACCAG490700AG490701
length1,260738
length of high quality
(start - end)
---435 (76 - 510)
definitionCHROMAT_FILE: MSMg01no388_c03.b1 PHD_FILE: MSMg01no388_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:23 2005CHROMAT_FILE: MSMg01no388_c03.g1 PHD_FILE: MSMg01no388_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATATAAATAATACATATCCTTCACTCTACTCCTACTCCTTACAACAC
ACCCCCTACCACTCCTCACGCGACGTCGCTCACGCCCTTCTNCTTCNCTC
TCTNNCATTCATATATCTCATTATCGTCTACTATCCCTAATATAATTTCA
TATNAGTATATATAACCTTATATTAACGTTTTATAATNGTATTTTTATTA
TTTATCTATTAACTATATCTATTATATACATTACATCACAGCAACACAAC
CAGCACGTTACTCTCTATATTACTACAACTCAACTCTTTTATACATTACA
TACACCAATATATATATATAATACTAAGACAACAACACCAATCATACTTT
CACCCCATATCTCTCTTACCTTNATAGACTCACCTATTACCACTATTACT
AATCTACGAAACAACTAAATTCATATATTCACACTCATTACTACTTACAC
CATCATTTCATCTACGCTCACAGACTACACTTCTCTTCTAGTATCGAGTC
ACATACATATCTCTCTATCATTATTTTTCTATACCATATAACTATTTACT
AACACTCTCCACCTTCTACTATCTAACTCTTCTTCTACTACACCAACTAC
CTCTCCTATATCTTACCCCTAATAACTTTATCACTCTTCTATAACACATC
ATCTATATATCACACTCTCATCATCACCATTATTTACATTCAATATTATA
AATCTCACTCCCATCTTTATACTATAACATTCCATAGTCACTCATATTCT
CCCATAATAACTTCTCTCACTCATACTTCCCTTAATTCATTCATACATCA
CTACTACTCTTTCTCCACCCTGACCTCCTCTTCTTTATCTCCTCCCATTA
TTCTCGCCGACCCTCCTATCATCACACTCTAACTCTACACTCAACTCTCT
TAATAATCTACAATATACCGATAACCTATAACTATATTCCACTGACGCAC
TATACTCATCACACAAATCAATATACACTTATATAATATACATACTCACT
ACTATCAACATTCCTCATTACTCATATATTATCTTATATCACCTCACTCC
ACTATTACTCTCTTCCTCTTATTTCACACACTCATCCCTTAACCCTACTT
CACNACCTCTCTTAGCTCATTTCTATAATCATCTATCTTAACACATACTT
ATCTTTATCCCTCAATACCTAATAAATACCTACTCCACTACCTAACTTCA
TATACATTATTCATACACCCTTTCACACATATATACATCTAATTAACTCA
TCACACACCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGACGTTAGATTAGAAAAAGAAG
CATGTGAACTGCAGATAGGACTCACATAGCAGGAGTCAACATAGAATTTA
GAACCCTGCTTTTCAGATAATGGCTGCCGAACTCTTTTCCATAAAGACTG
TAAGGTTGCAGGCAGCTACTGTGCATTCCTCTGTGCTTCTGCTAAAAATG
CTACATCATTCATGACTGTGGATTGCAATAACGATGCCACAAAGAAGTCA
AAAAGTAGCATATGTCCAGTGCACTCAGAGTCTTAAATACACGAAGTCTC
TTATGTATCTACATTTGTAGATTCTAGATTCCTAAACTGTGATATTGTTT
ACACCATCCCTGAGATTGTTCCTCCTTTAAGAATTGCTACCTATAGATGA
AGCATAGACACTAGGTACAATTCCACAAACATTAACCTCCAGACCACAGA
CCCTGGATTGCAGCACATCACTAATGACTCTAGATAACAGATGTGCTAGT
ATTGAAGTAGAAATANCCTTATGAAGATATGAAGGGCACCCTGTACTAAT
ATAAGCATCCCGCCCCACCCAACCAAGGCCAGGGCTCCTTATCAAACTTG
CCCCCCAATTTGGGGTTGGAAACCCCAACAACTTTGGGGGCCCTTTAACC
CCTTCCCCACACTTGGGGAATAACCCTAAACCTTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_c03.g1 MSMg01no388_c03.g1 CHROMAT_FILE:
MSMg01no388_c03.g1 PHD_FILE: MSMg01no388_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:23 2005
         (435 letters)



>mm_chr14_107724679_107725513
          Length = 835

 Score =  810 bits (419), Expect = 0.0
 Identities = 431/435 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgacgttagattagaaaaagaagcatgtgaactgcagataggactcacatagcaggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tttgacgttagattagaaaaagaagcatgtgaactgcagataggactcacatagcaggag 576

                                                                       
Query: 61  tcaacatagaatttagaaccctgcttttcagataatggctgccgaactcttttccataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tcaacatagaatttagaaccctgcttttcagataatggctgccgaactcttttccataaa 516

                                                                       
Query: 121 gactgtaaggttgcaggcagctactgtgcattcctctgtgcttctgctaaaaatgctaca 180
           | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ggctgtaaagttgcaggcagctactgtgcattcctctgtgcttctgctaaaaatgctaca 456

                                                                       
Query: 181 tcattcatgactgtggattgcaataacgatgccacaaagaagtcaaaaagtagcatatgt 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 455 tcattcatgactgtggattgcaataacgatgccacaaagaagtcgaaaagtagcatatgt 396

                                                                       
Query: 241 ccagtgcactcagagtcttaaatacacgaagtctcttatgtatctacatttgtagattct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccagtgcactcagagtcttaaatacacgaagtctcttatgtatctacatttgtagattct 336

                                                                       
Query: 301 agattcctaaactgtgatattgtttacaccatccctgagattgttcctcctttaagaatt 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 335 agattcctaaactgtgatattgtttacaccatccctgagattgttcctcctttaagaaat 276

                                                                       
Query: 361 gctacctatagatgaagcatagacactaggtacaattccacaaacattaacctccagacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gctacctatagatgaagcatagacactaggtacaattccacaaacattaacctccagacc 216

                          
Query: 421 acagaccctggattg 435
           |||||||||||||||
Sbjct: 215 acagaccctggattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)