GCCGCTATACGACTCACTATTTCCAGAGGATCCGCGGAATTCAACCAAAA
TATCAAATTAAGTAAAAATTAAAGTTGTTCTTTAGATGATATTTTTCTGA
GAACAGGGTTTTACATTGGTGTTACATTCACATTGGTGAATAGGTAAGTT
GGGGTGAATGCTTTTTAATATTAGTTTACCTCCTTAATTTTAATTAAAAA
AAACAAGAAAATAAAGACTACAATTTTATGGAGAACACTGAAAATATAGA
GAATATGGGAAAAATACATGCTAAATAAGGTCTACTGCCCATACAGACAA
TAGCTCAAACATCTATGAAAATGGTTAAAAAATAATCTTGCATGTGTTTG
TTTAAAAGTTTAGATTCCATCTTTAAGATCAATATGGAAATAAATATAAG
CAAAAAATATGAATAAAAATAAAAACTAAATAAACTATTCCTTGCTGAAT
AGTAGGAATCAAAAGATACACATTTTGAATGATTTCCTTTCTTTATGTAT
ATTCATATACTCTAGTATTGTAATGACCTTCCCTCTGCATTAATGCATGT
GTTTAATGAGATATATTACAGTAGAAATCATTATGGAATATATGTGTCAT
TTTCTTTGTCCAAGGGTAAAATATAAATTATCATTTCTATATTTTTGAAT
CCTGAATGAACTTAACCTTAATTCAATGCTGACAATTTGGAGATAGACTA
ACTTAGCCACCCATCCATTAGTGACCAGGATAACCTCCTTGATCCTGCAG
TCCTCTAAGTCATCTTTAT

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATGGAAGGCGGTGTTATCTCACT
GACTTTACCACGTAAAGTATGTGCTAATTGTACAACTTTAACTGTTTCCA
TTGTCTAACCCTTATCTAAGAAGTCGGTCTCCTAAATCATCAAGAGGCAA
AGTCTTTTAAGGAGGATTAAGCTATTCAAGATAATCTCTTGTAGGTATAA
TTAGGAATGGACTAGTTTAAACAGCATTTGACCTTGAAAGGCATGGCAAA
TAAATGGTGGCACTATTGCTTTTGTTTTCCCTGGCCAACAATAGGTATAC
TTCATAAATTGGCTTTAACGTTTGTGCTTAACAGACAATGTAGCTACTCT
TTCTGGACTGCCATGTGGTTAATTCACACTTTGTTTCTCTTGATTCTTTA
AGGAGATGCAGCCAGAAACTGTATAGCAATGTCTGTTGGAGGCTCCCACA
TTTCCTTGCCATTGTTTTACAATATAAGGAATCTGAGTTAGCCTAGGAAA
TGCTAAAAGATTCCTACTGGGACACAGAATTTAAGCACAGCAAGTGCCAA
GCAAAGTGGATAAATCCCAGTTGACATTTTCAGACTTGAGCCAGATTCCA
AGGAGAGCCCTATTAGTAAAGAGTCATCTAATTCACACTTCTAACACGAA
ACCAAATAAGCACTTTGCTAGGCCTGTGGTCCTGGGTTATTTTAGGAAGA
AAGTCT

Query= MSMg01no388_h01.b1 MSMg01no388_h01.b1 CHROMAT_FILE:
MSMg01no388_h01.b1 PHD_FILE: MSMg01no388_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:47 2005
         (542 letters)



>mm_chr14_113995324_113996265
          Length = 942

 Score =  971 bits (502), Expect = 0.0
 Identities = 532/542 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaagtaaaaattaaagttgttctttagatgatatttttctgagaacagggttttacat 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 attaagtaaaaattatagttgttctttagatgatatttttctgagaacagggtattacat 260

                                                                       
Query: 61  tggtgttacattcacattggtgaataggtaagttggggtgaatgctttttaatattagtt 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtggtacattcacattggtgaataggtaagttggggtgaatgctttttaatattagtt 320

                                                                       
Query: 121 tacctccttaattttaattaaaaaaaacaagaaaataaagactacaattttatggagaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacctccttaattttaattaaaaaaaacaagaaaataaagactacaattttatggagaac 380

                                                                       
Query: 181 actgaaaatatagagaatatgggaaaaatacatgctaaataaggtctactgcccatacag 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 actgaaaatatagagaatatgggaaaaacacatgctaaataaggtctactgcccatacag 440

                                                                       
Query: 241 acaatagctcaaacatctatgaaaatggttaaaaaataatcttgcatgtgtttgtttaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaatagctcaaacatctatgaaaatggttaaaaaataatcttgcatgtgtttgtttaaa 500

                                                                       
Query: 301 agtttagattccatctttaagatcaatatggaaataaatataagcaaaaaatatgaataa 360
           |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 agtttaaattccatctttaagatcaatgtggaaataaatataagcaaaaaatatgaataa 560

                                                                       
Query: 361 aaataaaaactaaataaactattccttgctgaatagtaggaatcaaaagatacacatttt 420
           |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 aaataaaaactaaataaaatattccttgctgaagagtaggaatcaaaagatacacatttt 620

                                                                       
Query: 421 gaatgatttcctttctttatgtatattcatatactctagtattgtaatgaccttccctct 480
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaatgatttcctttctttatgaatattcatatactctagtattgtaatgaccttccctct 680

                                                                       
Query: 481 gcattaatgcatgtgtttaatgagatatattacagtagaaatcattatggaatatatgtg 540
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 681 gcattaatgcatgtgtttaatgagatatattacagtagaaatcattaaggaatatatgtg 740

             
Query: 541 tc 542
           ||
Sbjct: 741 tc 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no388_h01.g1 MSMg01no388_h01.g1 CHROMAT_FILE:
MSMg01no388_h01.g1 PHD_FILE: MSMg01no388_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:47 2005
         (581 letters)



>mm_chr14_114176053_114177033
          Length = 981

 Score = 1077 bits (557), Expect = 0.0
 Identities = 575/581 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggaaggcggtgttatctcactgactttaccacgtaaagtatgtgctaattgtacaact 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 atggaaggtggtgttatctcactgactttaccacgtaaagtatgtgctaattgtacaact 722

                                                                       
Query: 61  ttaactgtttccattgtctaacccttatctaagaagtcggtctcctaaatcatcaagagg 120
           |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 721 ttaactgtgtccattgtctaacccttatctaagaagtcgttctcctaaatcatcaagagg 662

                                                                       
Query: 121 caaagtcttttaaggaggattaagctattcaagataatctcttgtaggtataattaggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 caaagtcttttaaggaggattaagctattcaagataatctcttgtaggtataattaggaa 602

                                                                       
Query: 181 tggactagtttaaacagcatttgaccttgaaaggcatggcaaataaatggtggcactatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 601 tggactagtttaaacagcatttgaccttgaaaggcatggcaaataaatgttggcactatt 542

                                                                       
Query: 241 gcttttgttttccctggccaacaataggtatacttcataaattggctttaacgtttgtgc 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 541 gcttttgttttccctggccaacaataggtatacttcataaattggctttaacatttgtgc 482

                                                                       
Query: 301 ttaacagacaatgtagctactctttctggactgccatgtggttaattcacactttgtttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttaacagacaatgtagctactctttctggactgccatgtggttaattcacactttgtttc 422

                                                                       
Query: 361 tcttgattctttaaggagatgcagccagaaactgtatagcaatgtctgttggaggctccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcttgattctttaaggagatgcagccagaaactgtatagcaatgtctgttggaggctccc 362

                                                                       
Query: 421 acatttccttgccattgttttacaatataaggaatctgagttagcctaggaaatgctaaa 480
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 361 acatttccttgccattgttttacaatataaggaatctgagttagcctagggaatgctaaa 302

                                                                       
Query: 481 agattcctactgggacacagaatttaagcacagcaagtgccaagcaaagtggataaatcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agattcctactgggacacagaatttaagcacagcaagtgccaagcaaagtggataaatcc 242

                                                    
Query: 541 cagttgacattttcagacttgagccagattccaaggagagc 581
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cagttgacattttcagacttgagccagattccaaggagagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)