BAC Information

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BAC

Clone NameMSMg01-388J14
Chromosome14 (Build37)
Map Location 104,152,596 - 104,153,159
singlet/doubletsinglet
Overlap genenone
Upstream geneKctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797, Scel, LOC100043448, Slain1
Downstream geneEdnrb, Pou4f1, 2610206B13Rik, D130009I18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388J14.T7 (MSMg01no388_j14.b1)MSMg01-388J14.TJ (MSMg01no388_j14.g1)
ACCAG491055AG491056
length769738
length of high quality
(start - end)
525 (34 - 558)566 (69 - 634)
definitionCHROMAT_FILE: MSMg01no388_j14.b1 PHD_FILE: MSMg01no388_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:58 2005CHROMAT_FILE: MSMg01no388_j14.g1 PHD_FILE: MSMg01no388_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTGTTT
AGCTCTGTTCCACATTTTTTAATAGGGTTATTTGGTTCTCTAGAGTCTAA
CTTCTTAAGTTCTTTGTATATATTGAATATTAGCCCTCTATCGAATGTAG
GATTGGTAAAGATCTTTTCCCAGTTTGTTGGTTGCTGTTTTGTCCAATTG
ACAGTGTCCTTTGCCTTACAGAAGCTTTGAAATTTTATGAGGTCCCATTT
GTCATCAATTCTTGTCTGGCAGTTTCTCAGAAAATTAGATATAGTACTAC
CTGTGGACCCAGCTATACCACTCCTGGGCACATACCCAGAAGATGCTCCA
ATATGTAATAAGGATACTATGTTCAGCACAGCCATATTTATAATAGCCAG
AAGTTGGAAAGAACCCAGATGTTCCTCAACAGAGCTATAGATATAGAAAA
TGTGGTACATTTACACAATGGAATACTACTTAGCTATTAAAAACAATGAC
TTCATGAAATTCCCAGGCAAATGGAAAGAACTTGAAAATATCATCTGAGT
GAGGTAACACACTCACAAAAGAACACGGTATGTACTCATTGATAGGTAAA
TATTACCCCCAAAGTTCACAATACCCACTATTCCATTCCAAGACCATATG
AAGCCTAAGAACAGGAAAGACCCCCATGTGAATCGCTTTCGNCGCTTTTG
AGAACGACGCAAAATCCTACCTCCCTGCGACTAAACATGTTCCACAAGCC
GTGGCACCCAAAAACTTAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAAGTGGAATTAGTGAATGGACAGAGGGATGA
GATGTGGAAGGGGCTGCTATCTCTAAGTCTCATTACTTGCAAAAGAGCAG
GAAGTAGGAATTGCAGTCAGATAGGAGTGAAGCTGCCGCTCTGATGTCCA
GGCCCCACAGTATGGGGCACCAGGAGAAAAATCTGTCTGAGAGAATAGTA
AACTTAGAGTAAAGGTTTTGTTTCAAAGCAGGAAAACCTTCTTACCCGAG
GTATGCTCTTATTTTTTTGCTTATTAGTGTTCCCAGAGATGGATGCATTT
GCTGTTAGAGTTTAGGGGTCTTCTCAAAGCGTGATTTTCGTGTAACCCCT
TTAAAACATCTTTCTTGTCTGCTTTTCTGTCAAGCATATTTTAAAATCTC
CTTTAAAAGTGAAGCTAAAAGTAATAGAAGCTGAAGACAGCAGAAGCTGT
TTCAGGAACATATTGCCAGCAACAGGCTATTCCATAAACATATTACCAGC
AACATGTAATGTCATTTTCTTTCTTATTTTTTCCATTAGTGCTGTAGGAG
ATAGCTGGGGATTATATTGAATGAACAGTTGGCCATTGCTGGCCATGAGT
TCATTCACTAGGAGCAGCTGATGTTTAAACATACACCACTGGGCTGTATG
TTTTATAAGAAATGTTGGCTTTCGTTCAAATTGTGATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_j14.g1 MSMg01no388_j14.g1 CHROMAT_FILE:
MSMg01no388_j14.g1 PHD_FILE: MSMg01no388_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:58 2005
         (566 letters)



>mm_chr14_104152396_104153359
          Length = 964

 Score =  938 bits (485), Expect = 0.0
 Identities = 547/571 (95%), Gaps = 12/571 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagtggaattagtgaatggacagagggatgagatgtggaaggggctgctatctctaagt 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 aaagtggaattagtgaatggacagagggatgaggtgtggaaggggctgctatctctaagt 260

                                                                       
Query: 61  ctcattacttgcaaaagagcaggaagtaggaattgcagtcagataggagtgaagctgccg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcattacttgcaaaagagcaggaagtaggaattgcagtcagataggagtgaagctgccg 320

                                                                       
Query: 121 ctctgatgtccaggccccacagtatggggcaccaggagaaaaatctgtctgagagaatag 180
           |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 321 ctctgacgtccaggccccacagtatggggcaccaggagaaaa-tctgtctgagagaaaag 379

                                                                       
Query: 181 taaacttagagtaaaggttttgtttcaaagcaggaaaaccttcttacccgaggtatgctc 240
           ||||||||||||||||||||||||||||| |||||||||||||||||| |||||| | ||
Sbjct: 380 taaacttagagtaaaggttttgtttcaaaccaggaaaaccttcttacctgaggtacgttc 439

                                                                       
Query: 241 tta---tttttttgcttattagtgttcccagagatggatgcatttgctgttagagtttag 297
           |||   |||    |||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 440 ttagcattt----gcttattagtgttcccagagatggatgcgtttgctgttagattttag 495

                                                                       
Query: 298 gggtcttctcaaagcgtgattttcgtgtaacccctttaaaacatctttct-tgtctgctt 356
           |||||| ||||||| |||||||||||||| ||||||||||||||||| || |||||||||
Sbjct: 496 gggtctcctcaaagagtgattttcgtgtatcccctttaaaacatctt-ctatgtctgctt 554

                                                                       
Query: 357 ttctgtcaagcatattttaaaatctcctttaaaagtgaagctaaaagtaatagaagctga 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ttctgtcaagcatattttaaaatctcctttaaaagtgaagctaaaagtaatagaagctga 614

                                                                       
Query: 417 agacagcagaagctgtttcaggaacatattgccagcaacaggctattccataaacatatt 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 agacagcagaagctgtttcaggaacatattgccagcaacaggctattccataaacatatt 674

                                                                       
Query: 477 accagcaacatgtaatgtcattttctttcttattttttccattagtgctgtaggag-ata 535
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 675 accagcaacatgtaatgtcattttctttcttattttttccattagtgctgtaggagga-a 733

                                          
Query: 536 gctggggattatattgaatgaacagttggcc 566
           |||||||||||||||||||||||||||||||
Sbjct: 734 gctggggattatattgaatgaacagttggcc 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 964
Length adjustment: 10
Effective length of query: 556
Effective length of database: 954
Effective search space:   530424
Effective search space used:   530424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)