BAC Information

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BAC

Clone NameMSMg01-388O02
Chromosome14 (Build37)
Map Location 115,939,203 - 115,939,517
singlet/doubletsinglet
Overlap geneGpc5
Upstream geneLOC100043521
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388O02.T7 (MSMg01no388_o02.b1)MSMg01-388O02.TJ (MSMg01no388_o02.g1)
ACCAG491269AG491270
length787762
length of high quality
(start - end)
341 (65 - 405)532 (76 - 607)
definitionCHROMAT_FILE: MSMg01no388_o02.b1 PHD_FILE: MSMg01no388_o02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:18 2005CHROMAT_FILE: MSMg01no388_o02.g1 PHD_FILE: MSMg01no388_o02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGCCGCTAAACGACTCCTATATCGACAAGCAGCGCGGAATTCCAGGCAG
TCCGAGACTTGCGCTATCAGCTTGTAGATTATAGAATCCAAACTCTTTTT
CTGACTTACTAGGGTTAGGACTTATTAGGGTTAGGGTTACAAGAATCTCA
TTGTCCCTGGCCCTTCAATATATCTCATTCTTCTATTTTCAAATTGTTGT
CTAACTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAT
CTATCTATCTATCCATCCATCAACCTATAATCTATTTATTTATTATGTAT
CTACTATGTTTCTATCATTTCTCCCTCTGTCTTTTTCCCTCATCTCTCCA
TTCCCTATTTCAACTTCTTTTTTTTTAAATAAAATTTGCTTGTAATTTTT
ACCCCACTGACAAAGGAAACCAGGAAAGATGAGAGAGAGAGAGACAGAGA
CACAGAGAGATATAGACAGAGAGACTGAGGCAGAGAGGAAAGCTCAGGTG
ACTAACCTTTACCATGATTAGGAATACATGGAGTCTGTCGATTTTAAGGT
CCCCAGAGACTGCTTTACCGAACTTTCCGGGAGAACGTGACCCATGGTCT
TTAGCGATATTTCACACCACTTCCCCTGCAAATGGGAAGTCCCTTGCCCC
TTGGGACCCTGGACCTCTTACTCCAACGCGGTTAAAATTTCTTCTGGACC
CCTCTTATCCCTTCCCACCCCCACGTCCTTCTTACCCTGCTCTCCGCAAC
ACCCCGCCTCCACCCACTTGCGGCCTTCCTCCCACCC
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCACTTCCTGGTGCTGCCAGTCTC
TTGAGCGTTAGGTGCATCTTCTCTGACTGAACACAGACCCAGCAGTCCTC
TACTGTGTTGGGGGCCTCATATCAGCTGGAGTATGCTGTCTGGTTGGTGG
TCCAGTGTCTGAGAGAGCTCAGGGGTCCAGACTAATTGAGACTGCTGGTC
CTCCTTACAGGGTCCCCCTCCTCCTCAGCTTCTTCCAGCTTTCCCCGAAT
TCAACCACAGGGATCAGTATCTTCTGTCCATTGCTTGGGTGCAAATATCT
GCATCTGACTCTTTCAGCTGCTTGTTGGGTCTTTTGGAGGATAGTCATGA
TAGAACACTTTTTGTGAGCCTCAGTAATAGTGTCAGGCCTTGGGACTTCC
CATTGAGCTGGCTCCCACTTTGGGGCTGTCCCTGGACCTTCTTTTCCTCA
GGCTCTTCTCCATTTTTGTCCCTGAATTTCTTTCAGACAGGAACAATTAT
GGGTCAGAGTTTTTGACTATGGGATGGCAACCCCTCTCTCACTTGAGGCC
CTGTCTTCTTGCTGGAGGTGGGCTCTACCAGTCACCTCTCCCCACAGTAC
AGCATTTCATCCTGGGCCCTTCCCTTTGAGCCCTGAGACTCTTTTACCCC
CCAGGCCTCTGGTCACATTCTGGGAGGGCCTCATACCTCCCTACTCCCCC
AGGGTGGCTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_o02.b1 MSMg01no388_o02.b1 CHROMAT_FILE:
MSMg01no388_o02.b1 PHD_FILE: MSMg01no388_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:18 2005
         (341 letters)



>mm_chr14_115939003_115939743
          Length = 741

 Score =  524 bits (271), Expect = e-153
 Identities = 310/339 (91%), Gaps = 26/339 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatcagcttgtagattatagaatccaaactctttttctgacttactagggttaggactta 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 tatcagcttgtagattatagaatccaaactcttcttctgacttactagggttaggactta 260

                                                                       
Query: 61  ttagggttagggttacaagaatctcattgtccctggcccttcaatatatctcattcttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagggttagggttacaagaatctcattgtccctggcccttcaatatatctcattcttct 320

                                                                       
Query: 121 attttcaaattgttgtctaactctatctatctatctatctatctatctatctatctatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 attttcaaattgttgtctaactctatctatctatctatctatctatctatctatctatc- 379

                                                                       
Query: 181 atctatctatctatctatccatccatcaacctataatctatttatttattatgtatctac 240
                                  |||||||||||||||||||||||||||||||||||||
Sbjct: 380 -----------------------catcaacctataatctatttatttattatgtatctac 416

                                                                       
Query: 241 tatgtttctatcatttctccctctgtctttttccctcatctctccattccctatttcaac 300
           |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 417 tatgtttctatcatctctccctctgtctttttccctcatctttccattccctatttcaac 476

                                                  
Query: 301 ttcttttttttt--aaataaaatttgcttgtaattttta 337
           ||||||||||||  |||||||||||||||||||||||||
Sbjct: 477 ttctttttttttttaaataaaatttgcttgtaattttta 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)