BAC Information

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BAC

Clone NameMSMg01-388O11
Chromosome14 (Build37)
Map Location 15,504,809 - 15,505,047
singlet/doubletsinglet
Overlap geneLOC100042147
Upstream geneA430083B19Rik, EG382844, LOC100042045, Gm281, Thoc7, Atxn7, Psmd6, Olfr720, LOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1, LOC667152
Downstream geneSlc4a7, Nek10, Lrrc3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388O11.T7 (MSMg01no388_o11.b1)MSMg01-388O11.TJ (MSMg01no388_o11.g1)
ACCAG491287AG491288
length766752
length of high quality
(start - end)
341 (60 - 400)239 (77 - 315)
definitionCHROMAT_FILE: MSMg01no388_o11.b1 PHD_FILE: MSMg01no388_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:20 2005CHROMAT_FILE: MSMg01no388_o11.g1 PHD_FILE: MSMg01no388_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGNGGAATTTCTAG
GTTCCCCTAGGTATTGCTGCCTGTGGATGTAAGAGTTTGTAGTAATAACA
AGGCAGTGTACACCAGCACAAATAGGGGAATGGGGACCCTAATCTGGACT
AGGAGTAAACAAAAGGCATTTGAGGCTTACAGCCTAGTTTAGGATATCTC
AGCCAGATGTTTGTGCTCTTGGAAGGGGTCAAACAGCTGACTTACCAAGA
CCTGGCCAGTTAGGGGAAGATACAAGCACTTGCTAGGTTTTATAGATACC
TTATCTGGCTTTCCCCATGTGAACTAAAATGTTCAACTAGTATCTAAAAA
GCTCCTCACGGAACTGGTTTCCTGATTTGGCCTTGCTAGCAATAGGGCCC
AACCCCCGCCCTTTCATAGCCAAAACCTTTCAATTAATAGAATTTCATTG
TTCTGGGAAAACTTAAACAGGACATAGCTTTTAAATTAAAAAAAAAAAAT
TTAAAGCAACTCTAACAAATTTCTCCCTAGAGTCCAGAAAGTGGGACTGA
AGAGATGCTTCAGAGGTCCTGAGCTCCATTCCCCGCAAGCACATGATGGT
CCCCACTACCAGTCATAATTGGATCCGACGCCCTCCTCCGGCATGCCTGG
TTCGATACCTACCGAGCCCCCCTTATGCATGAAACAATTCCTTACTCTTT
TACGAAAACCAAATCCCGCCCAAGGGTGGAAAGGAACTTTGGCCCTTGCC
TCGGCTTCAGCCCGGG
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCCACGCGCCAATCTTTTTAAGGTTCTCTGTGAACAA
GCAGGGGCACAGATAATAGGCCGGCCAGTTCAGACACCTGAATCGTAAGA
AAGTCTGAGTTAATTACAGCAAGCATTTTCTCCCTTCACACTGAGGCCCA
CAGCCATCTGACTGTGAAGGAGGCCAAGGTGTGCCTTCCCAGGAGGAACC
TCTGAAACCAGCCTCCTCACTTGCAAACACATTAGTCTTAGCAGTTAAAA
CTCTGAATGCAGAAAGGTTTTGTGAGATACCAAAGTGTGGTCACTGGGCT
GAGCTTGTTTTCCATAGAGCTTTCCAGGCACATGACATGGGAATGGTTTG
GGGGGCACAGTGCCCCCCCCACACAATGATGGGGAGTAAGTCCTGCCTGA
GGGCACCCAAGCTGAAGAACATCCCACTTGACAGTGACCCTGCCCCACCA
GATGCTTGGTTGAAGGCCATCACAAAAGTTCATGTAGGGGTAGAGCAAAA
CACAGCCAAGAAAATTCCCTCGATGGGCAGTTCTTTTATTATAAATCCTT
TAACTCAACTAAATTACATTTTGCGCGGGCGTCTGCGTTGCATGATTTGA
GGTCCTTCGACCACTTTGTGGAGCCCGTTTTCTCCTTTTACCCTACCATT
ACCTCTGAGACTTGCCCTACTTTGCCCAGTTTATGTTCCCGTTGGTCTTA
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_o11.g1 MSMg01no388_o11.g1 CHROMAT_FILE:
MSMg01no388_o11.g1 PHD_FILE: MSMg01no388_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:20 2005
         (239 letters)



>mm_chr14_15504609_15505247
          Length = 639

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttttaaggttctctgtgaacaagcaggggcacagataataggccggccagttcagaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ctttttaaggttctctgtgaacaagcaggggcacagataataggccggccagttcagaca 380

                                                                       
Query: 61  cctgaatcgtaagaaagtctgagttaattacagcaagcattttctcccttcacactgagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cctgaatcgtaagaaagtctgagttaattacagcaagcattttctcccttcacactgagg 320

                                                                       
Query: 121 cccacagccatctgactgtgaaggaggccaaggtgtgccttcccaggaggaacctctgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cccacagccatctgactgtgaaggaggccaaggtgtgccttcccaggaggaacctctgaa 260

                                                                      
Query: 181 accagcctcctcacttgcaaacacattagtcttagcagttaaaactctgaatgcagaaa 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 accagcctcctcacttgcaaacacattagtcttagcagttaaaactctgaatgcagaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)