BAC Information

Click to search

BAC

Clone NameMSMg01-389F20
Chromosome14 (Build37)
Map Location 121,253,306 - 121,253,846
singlet/doubletsinglet
Overlap genenone
Upstream geneHs6st3, Oxgr1, Gabarapl2-ps, LOC100043831, Mbnl2, Rap2a, LOC668835, LOC668837
Downstream geneRanbp5, Farp1, LOC100043837, Stk24, Slc15a1, LOC100043577, Dock9, LOC668843
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389F20.T7 (MSMg01no389_f20.b1)MSMg01-389F20.TJ (MSMg01no389_f20.g1)
ACCAG491637AG491638
length769752
length of high quality
(start - end)
460 (76 - 535)543 (79 - 621)
definitionCHROMAT_FILE: MSMg01no389_f20.b1 PHD_FILE: MSMg01no389_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:56 2005CHROMAT_FILE: MSMg01no389_f20.g1 PHD_FILE: MSMg01no389_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTCACAATACCCATAGCCCACCTGCTTTAAATCCCTGTGTTGAA
CTTCTAGTTTAAGGATAATGGTTTCAAGGAACTTTCCTCTGTGCTGACTG
GCTCTTGTGGTCCTGAAAAGTGCTCTGCAGGCTTCTGAGAGGTAGAGGAG
TCTCAACACTCTGATACAGCTGTGAGCTACAATAATGACTGGTCCAACAA
TGAACACCCATGGGTGCACTCCTGTCGTGAATGTTATGGTGACCATCTGC
TTTCTGAGTGGATTTAAGGTCTGCTCTATGACAGAAAAGGATTCAGGGTA
GAGCAAATCTGAAGAACAACTCATGATGGGAGAGCTAGCAGGCTCCATGG
CAGCCCCTGCTACTGTTACTCAGCTAAACAACATAGTATCAAATTACCTG
CTGAATATGTATCTCTCTACCCACAGAGTTTGTACCTCTCTCTACCTACA
GATTAGCACAGCTCCCGGAGTTCCTCTTTGTGCAGTGGGCAGAGGTTATA
CTTCCACAGCTGGTCGAAGCATACAATGCTAGAGCGCCCACTCACCAATG
AGGCGTGCATGCCAGTGCCCCAGCCCCTACCAAGTCTCAGCGACTGTCTC
AGAACACGCCCATAACTACTGCACCCACCTGATCCCCTAGAGGATCCCCA
ACACACCAGCGCCCCCTTGTTTCCCCGCCGACCCCCCGACTACCTTTCCG
AACCCCTCCCGTCGCTTCC
NNNNCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAATCTGTGAGACAGATGCA
GAATCCTGAATATTTACATCTGTCTGACATTCCATTGTTGTAACCTCATC
CCTAAGGTTCCCTAAAGGCTTGAGTCTTTGAGACGAGAAAAAAATGAGAC
TCTCAGTACACAATAGCAAGTTCAAGAAGAAAAAGTGACGCCTTCTTTAC
AATTTCCTTCCTGTGGAACCAGGTGTCAGCCAAACAAAGGCAAAAATGAC
TGCTGGGCCAATTTGACATGAAACACGGTATTTTACAGTCACAGCCACAG
CCACAGCCATCTGCCTTCTCTTTGCCACTGACTGGATCCTTCAGAGAGTT
ATATCCTTCCTGACCACCTAGCACAGTCCTGCCCTCACTCTCATCCTCTG
GAGTCTTGACATCCCCACTCTCTTCCTGACACATGGACTTATTCTTGTAC
CAGGCTCATTTTTCCATCCTGAGATAAACCTTTGGCTTGAATGAGGAGTA
GGCATACATTTTTTGCAACCTACTTTTTTGGTTTTTTCCGAGACAGGGTT
TCTCTGTATAGCCCTGGCTGTCTTGGAACTCACTTTGTAGACCAGGCTGG
CCTCAAACTCAGAAATGCGCCTGCCTCTGCCTCCTGAGCAACCTACTTTT
AACAAGGGGTCAATCTCTCCTCCAGGCTACCACCCAGAAAAGGTGTGGGA
AA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_f20.g1 MSMg01no389_f20.g1 CHROMAT_FILE:
MSMg01no389_f20.g1 PHD_FILE: MSMg01no389_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:56 2005
         (543 letters)



>mm_chr14_121252925_121253864
          Length = 940

 Score =  905 bits (468), Expect = 0.0
 Identities = 524/550 (95%), Gaps = 16/550 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaatctgtgagacagatgcagaatcctgaatatttacatctgtctgacattccattgt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 922 tttaatctgtgagacagatgcagaatcctgaatatttacatctgtctgactttccattgt 863

                                                                       
Query: 61  tgtaacctcatccctaaggttccctaaaggcttgagtctttgagacgagaaaaaaatgag 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 862 tgtaacctcatccctaaggttccctaaaggcttgagtctttgagacaagaaaaaaatgag 803

                                                                       
Query: 121 actctcagtacacaatagcaagttcaagaagaaaaagtgacgccttctttacaatttcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 actctcagtacacaatagcaagttcaagaagaaaaagtgacgccttctttacaatttcct 743

                                                                       
Query: 181 tcctgtggaaccaggtgtcagccaaacaaaggcaaaaatgactgctgggccaatttgaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tcctgtggaaccaggtgtcagccaaacaaaggcaaaaatgactgctgggccaatttgaca 683

                                                                       
Query: 241 tgaaacacggtattttacagtcacagccacagccacagccatctgccttctctttgccac 300
            ||||||||||| ||||||||||||||||||||||      |||||||||||||||||| 
Sbjct: 682 cgaaacacggtagtttacagtcacagccacagcca------tctgccttctctttgcca- 630

                                                                       
Query: 301 tgactggatccttcagagagttatatccttcctgaccacctagcacagtcctgccctcac 360
           | ||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 taactggattcttcagag--ttatatccttcctgaccacctagcacagtcctgccctcac 572

                                                                       
Query: 361 tctcatcctctggagtcttgacatccccactctcttcctgacacatggacttattcttgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tctcatcctctggagtcttgacatccccactctcttcctgacacatggacttattcttgt 512

                                                                       
Query: 421 accaggctcatttttccatcctgagataaacctttggcttgaatgaggagtaggcataca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 511 accaggctcatttttccatcctgagataaacctttggcttgaatgaggaataggcataaa 452

                                                                       
Query: 481 ttttttgcaacctacttttttgg-----ttttttccgagacagggtttctct--gtatag 533
           |||||||||||||||||||||||     |||||||||||||||| |||||||  ||||| 
Sbjct: 451 ttttttgcaacctacttttttgggttttttttttccgagacaggatttctctctgtatat 392

                     
Query: 534 ccctggctgt 543
           ||||||||||
Sbjct: 391 ccctggctgt 382


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 940
Length adjustment: 10
Effective length of query: 533
Effective length of database: 930
Effective search space:   495690
Effective search space used:   495690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)