BAC Information

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BAC

Clone NameMSMg01-389I22
Chromosome14 (Build37)
Map Location 80,300,803 - 80,301,175
singlet/doubletsinglet
Overlap geneEG629734
Upstream gene1300010F03Rik, LOC629709, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8
Downstream geneOlfm4, LOC672828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389I22.T7 (MSMg01no389_i22.b1)MSMg01-389I22.TJ (MSMg01no389_i22.g1)
ACCAG491784AG491785
length795753
length of high quality
(start - end)
369 (73 - 441)558 (80 - 637)
definitionCHROMAT_FILE: MSMg01no389_i22.b1 PHD_FILE: MSMg01no389_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:12 2005CHROMAT_FILE: MSMg01no389_i22.g1 PHD_FILE: MSMg01no389_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGGGTAGTTTCCTAAATAAATAAATAAATAAACAAACAAATA
GATAGATAGATAGATAAATAAATGTAACAAACAAGAGACTATCTGTGTGC
AGAAAGCCCAAGAAGGCTCTAGAGAGGGTCCTTCCACATGTCCAGTAGAT
GTATACTTTCCAGTAATTCCTTGGGTATTTCTTTCTGCTCTAGTCATCCC
CTCCTGGCTCCAAGCAATTAATTCCAGAAAGATCTACAGAGTCTTTGGAG
ACACCACTTATAGTTTTATTAGTGGCTCTCAGAGTGAGCAAAATATTGAT
CCAGAGTACAGACTCTGGAGCAGATGGCATAGGTCCAAATCTTGGCATCA
CCATTAACCATCCTTGGGATTCTGAGCGAGGAAAATTACTTACGCTCCGT
GTTTGTTTTCTGATCTGACAAAGGCTGATAATGACCATCCCTGCCTCATT
TGTTAGATGACCAACTACACCCCAAACCCCTAACAGTTGCCCCGAGCATG
CCCAAGATCTCCCCCCATTGTCCCGAATTCCCGCTCCTCTATTGAGCTCT
TACCGACTACCGGCCAGTACCATGTTTCCTGTAACCACCATTGCCCTTTT
GTCCATGGGCAATTCCCTTGCGTTTCCCCCATACCCCCCCTTTCCCCCCC
CCGAAACGCCCCCTTCCTCCCCCCGGGCCCGTTCTCTAACTCCCCTGCGC
TCCAAACTTTCCCCCTCTTCTCCCCCCCTCCCTTCCCCTTCTTCN
NNNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGACCACTC
TGGAGATCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGA
GGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTG
GTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATA
GCCAGAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACA
GAAGATGTGGTACATCTACACAATGGAGTATTTCTCAGCTATTAAAAAGA
ATGAATTTATGAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCATC
CTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACT
GATAAGTGGATATTAGCCCAAAACCTAAGATACCCAAGATATAAGATACA
ATTTCCTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGAACA
CTATGCCCCTCCTTAGAAGTGGGAGCAAAACACCCTTGGAAGGAATTACA
GAGACAAAGTTTGGAGTTGAGATAAAAGGATGGACCATGTAGACACTACC
ATATCCGGGGATCCATCCCATAATCAGCTTCCCAAGCTGACACCATTGCA
TACCTAACAAGATTATGCTGAAAGGACCCTGAGATAGCTGTCCCTTGCCA
GAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_i22.b1 MSMg01no389_i22.b1 CHROMAT_FILE:
MSMg01no389_i22.b1 PHD_FILE: MSMg01no389_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:12 2005
         (369 letters)



>mm_chr14_80300607_80301375
          Length = 769

 Score =  687 bits (355), Expect = 0.0
 Identities = 367/373 (98%), Gaps = 4/373 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataaataaataaataaacaaacaa----atagatagatagatagataaataaatgtaac 56
           |||||||||||||||||||||||||    ||||||||||||||| |||||||||||||||
Sbjct: 197 aataaataaataaataaacaaacaaacagatagatagatagataaataaataaatgtaac 256

                                                                       
Query: 57  aaacaagagactatctgtgtgcagaaagcccaagaaggctctagagagggtccttccaca 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aaacaagagactatctgtgtgcagaaagcccaagaaggctctagagagggtccttccaca 316

                                                                       
Query: 117 tgtccagtagatgtatactttccagtaattccttgggtatttctttctgctctagtcatc 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tgtccagtagatgtatactttccagtaattccttgggtatttctttctgctctagtcatc 376

                                                                       
Query: 177 ccctcctggctccaagcaattaattccagaaagatctacagagtctttggagacaccact 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ccctcctggctccaagcaattaattccagaaagatctacagagtctttggagacaccact 436

                                                                       
Query: 237 tatagttttattagtggctctcagagtgagcaaaatattgatccagagtacagactctgg 296
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tacagttttattagtggctctcagagtgagcaaaatattgatccagagtacagactctgg 496

                                                                       
Query: 297 agcagatggcataggtccaaatcttggcatcaccattaaccatccttgggattctgagcg 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 agcagatggcataggtccaaatcttggcatcaccattaaccatccttgggattctgagcg 556

                        
Query: 357 aggaaaattactt 369
           |||||||||||||
Sbjct: 557 aggaaaattactt 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)