BAC Information

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BAC

Clone NameMSMg01-389M01
Chromosome14 (Build37)
Map Location 81,833,282 - 81,978,696
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC672828, LOC639207
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389M01.T7 (MSMg01no389_m01.b1)MSMg01-389M01.TJ (MSMg01no389_m01.g1)
ACCAG491933AG491934
length718739
length of high quality
(start - end)
366 (78 - 443)561 (83 - 643)
definitionCHROMAT_FILE: MSMg01no389_m01.b1 PHD_FILE: MSMg01no389_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:27 2005CHROMAT_FILE: MSMg01no389_m01.g1 PHD_FILE: MSMg01no389_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,833,282 - 81,833,645)(81,978,136 - 81,978,696)
sequence
CCCCCNGCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCGTGATTTTCGGTAATTGTAATCCATTTTGGTGGTT
ATAATGGTGATTTACAAAATTCACTGGGAAGTATGTATACCTCCTAGAAT
AGAGAACTAAGAAATGTATTTGTACTGGTTGAGGTGGGGGCTTATATATC
TGTTGTGGATGTGCAATGTCACCTACAGGTTCATGTTTAATATCACTTAG
TCTAGTTGGTGGATATATTTTGATAGGAGGTGGAAAACTTAGAAATTGGA
ACCTACCTAGAAGAACTGGGTTGCTGTGTGTGTGCTGAGGAGAGTTATAC
CTGGTCCTGGGTCTCTTCCTACACCTCTGTTTCTTATATCCCATGACACA
AAGAAGTTTCTCTCTCTAATCCCCACTATCATAGGATATTACGACCAGTG
CATAGGGCTGAACAGCCATGGAATGAACACCTGAAACAGAGCCCATATAA
ATTGTTCTTCAATTACATTGTTACGTTCACACATTTTCTTATACTGACGC
CAATACCCAACATATTATCCTAATTGAATGTGGCCGAGAGCTGTATCTCA
CACCAATCATAGGTATAATTAACCGACTGAGTCTCTCACTGACATCAAGC
GGACTACTACCCCCTTTTTGTCTTGGTCCGTCTCGCTTTCTCCCGACCGC
GTTTCTCCGCACCCCCCT
NNCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACATGTGTACTGCGCGA
TGAATTTAATTTAAATTTTTCTATCCCCACTTTTGCCTTCTGTCACCACT
GGGAGAAATTGAACCACTTGACTGCTGCTGTGGCAAATTGGATCCTAATA
AGGATGATGCTTTAGTACTTCTTGTTTTTGCTAAGATACAACTGCAGTAT
TTGAGAAGAACTCACCTGGGTATTAATTCAACAAGAGATGCTGGTAGGAA
CATTATATTTTCCACGTTCTGCTATCTCAGTGAATGTGCTGCATATAAAG
AGGATCAGCAGATGGACTGTTTAACTCACTGATGTGCTTGTCATTCCAAC
ACTAGGTGAGGCTGACTAATCTCGATGCACTTAGAAATGATAATCTCAGT
GTTTCAAATTGGTATTATTCAAAATAATATGCCTTTCCCTGTATAACTAA
TGCATGTGCTTCAATATGAAGTGTCCATGTCAGATGCTATCCTGAAAAAA
ATGCCAACATTTTGAGTCCTTATAGAACTTGTTTAAATAATTGCTGAGAA
ATCAACATATAAAATATAAATAAATAAAATGGTGGCATAATCAATTAACC
CAGTTTTAAGTTAAATATAAAAGTTTCTGACACACATTTTCTTAACTATT
ATACCAATGGAAAGATTTTAAAAGCATATGTGGTACAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_m01.b1 MSMg01no389_m01.b1 CHROMAT_FILE:
MSMg01no389_m01.b1 PHD_FILE: MSMg01no389_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:27 2005
         (366 letters)



>mm_chr14_81833082_81833847
          Length = 766

 Score =  673 bits (348), Expect = 0.0
 Identities = 360/364 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattgtaatccattttggtggttataatggtgatttacaaaattcactgggaagtatgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattgtaatccattttggtggttataatggtgatttacaaaattcactgggaagtatgta 260

                                                                       
Query: 61  tacctcctagaatagagaactaagaaatgtatttgtactggttgaggtgggggcttatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacctcctagaatagagaactaagaaatgtatttgtactggttgaggtgggggcttatat 320

                                                                       
Query: 121 atctgttgtggatgtgcaatgtcacctacaggttcatgtttaatatcacttagtctagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctgttgtggatgtgcaatgtcacctacaggttcatgtttaatatcacttagtctagtt 380

                                                                       
Query: 181 ggtggatatattttgataggaggtggaaaacttagaaattggaacctacctagaagaact 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtggatatattttgataggaggtgaaaaacttagaaattggaacctacctagaagaact 440

                                                                       
Query: 241 gggttgctgtgtgtgtgctgaggagagttatacctggtcctgggtctcttcctacacctc 300
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggttgctgtgtgggggctgaggagagttatacctggtcctgggtctcttcctacacctc 500

                                                                       
Query: 301 tgtttcttatatcccatgacacaaagaagtttctctctctaatccccactatcataggat 360
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 tgtttcttatatcccatgacacaaaggagtttctctctctaatccccactatcataggat 560

               
Query: 361 atta 364
           ||||
Sbjct: 561 atta 564


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no389_m01.g1 MSMg01no389_m01.g1 CHROMAT_FILE:
MSMg01no389_m01.g1 PHD_FILE: MSMg01no389_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:28 2005
         (561 letters)



>mm_chr14_81977973_81978933
          Length = 961

 Score = 1054 bits (545), Expect = 0.0
 Identities = 557/561 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacatgtgtactgcgcgatgaatttaatttaaatttttctatccccacttttgccttctg 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 724 cacatgtgtactgcgcgatgaatttaatttaaaattttctatccccacttttgccttctg 665

                                                                       
Query: 61  tcaccactgggagaaattgaaccacttgactgctgctgtggcaaattggatcctaataag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tcaccactgggagaaattgaaccacttgactgctgctgtggcaaattggatcctaataag 605

                                                                       
Query: 121 gatgatgctttagtacttcttgtttttgctaagatacaactgcagtatttgagaagaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gatgatgctttagtacttcttgtttttgctaagatacaactgcagtatttgagaagaact 545

                                                                       
Query: 181 cacctgggtattaattcaacaagagatgctggtaggaacattatattttccacgttctgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 cacctgggtattaattcaacaagagatgctggtaggaacattatattttccacgttctgc 485

                                                                       
Query: 241 tatctcagtgaatgtgctgcatataaagaggatcagcagatggactgtttaactcactga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tatctcagtgaatgtgctgcatataaagaggatcagcagatggactgtttaactcactga 425

                                                                       
Query: 301 tgtgcttgtcattccaacactaggtgaggctgactaatctcgatgcacttagaaatgata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tgtgcttgtcattccaacactaggtgaggctgactaatctcgatgcacttagaaatgata 365

                                                                       
Query: 361 atctcagtgtttcaaattggtattattcaaaataatatgcctttccctgtataactaatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 atctcagtgtttcaaattggtattattcaaaataatatgcctttccctgtataactaatg 305

                                                                       
Query: 421 catgtgcttcaatatgaagtgtccatgtcagatgctatcctgaaaaaaatgccaacattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 catgtgcttcaatatgaagtgtccatgtcagatgctatcctgaaaaaaatgccaacattt 245

                                                                       
Query: 481 tgagtccttatagaacttgtttaaataattgctgagaaatcaacatataaaatataaata 540
           ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 244 tgattccttatagaacttgtttaaataattgctaagaaatcaacatataaaatataaata 185

                                
Query: 541 aataaaatggtggcataatca 561
           ||||||| |||||||||||||
Sbjct: 184 aataaaacggtggcataatca 164


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)