BAC Information

Click to search

BAC

Clone NameMSMg01-389N13
Chromosome14 (Build37)
Map Location 69,976,559 - 69,976,893
singlet/doubletsinglet
Overlap geneEntpd4
Upstream geneAdam7, Adamdec1, Adam28, LOC641033, LOC100043082, Stc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik
Downstream geneLoxl2, R3hcc1, Chmp7, Tnfrsf10b, Rhobtb2, LOC100043701, 1700081D17Rik, LOC668397, Egr3, Bin3, 2610301G19Rik, 9930012K11Rik, Pdlim2, Sorbs3, Ppp3cc, LOC100043115, Slc39a14, EG668450, Piwil2, Polr3d, Phyhip, Bmp1, Sftpc, Lgi3, Reep4, Hr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389N13.T7 (MSMg01no389_n13.b1)MSMg01-389N13.TJ (MSMg01no389_n13.g1)
ACCAG492004AG492005
length816753
length of high quality
(start - end)
333 (71 - 403)246 (84 - 329)
definitionCHROMAT_FILE: MSMg01no389_n13.b1 PHD_FILE: MSMg01no389_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:35 2005CHROMAT_FILE: MSMg01no389_n13.g1 PHD_FILE: MSMg01no389_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTTCACTXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCG
CGGAATTCAGCTAATTGGCTTTTAGCTACTTCTTCCTGTAGGCACGGACG
ACACATTTCGGTATTTTAAAGCAACGTTAGCTCCAGTTACAAAAGAAGGG
TCTAAAAAGAGTTCTATTAAAAGCAGCAGATTCTCTCTCCACCTCCCCCA
AGGATGCTAAGCATTGTTCATAATGCAGTATGATTCTAACTGAGGGAACT
GCAGCTGCTGCACATGTGTGGTATTAGGACTTTCTGAAAAGGAGGTCAGA
ACTATATAGTTCCTCCTCTCTGACCCACAGATCTATTTATGCTACCTCCT
GATGCGGACACAGACCCAAACATAGGAATGTCCCAATAAATAAAGATACC
TTCCAAAAACAAAAACCAAAACCAAAACTAAAACAACACAAAACAAAACG
AAAAAGACATAGCCTCTGAGTGGTCCACACCAAGGCAGGGTTAGGCTAAT
GACAGTCATCAGTCATAGAGCAATACTCCGAGCCCTGTGAATAACGGCGC
CATCATCTCTCCCAATGGACAAACTGTACTACCCCCACCTCTTATACCAC
CCACCGGCATTAACACCAGCCGCTAAATAAATCCCCTCACAACCCTAAAC
CTCGCCTTTCTTCCTTTNTCAATCCCCGTGGAGCCCTCGCCGCTAACCTC
TCTTTTTCCCCTCCGGTTTGCCCTCCACCCTCTCTTTTTTGGCCTTCCCG
CCTTCTCTCCCCTCCTGAAACGTCGCCACTTCCCGTCTCTTCGCCTTCCC
CCCTTTTTCATCCTTN
NNNNCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGAGGACTTATACTTA
ATAAATTGCTGCAAACAAATACTCTTATTTCTAAGTTAATAAATAAATAA
ATTATGCACATGTGACTATTAATAACCTTTCAAGCTTTCTAGTTACAACC
GCTCCTTAAGAGAAACTATTGAAAGTGCAATTAGTCACTGCCCATGTTAC
ATGAATACTGACTATAACAGTCAAGTACTTGAGACGTTTTGTCAACGTTA
TTAATTCTAAAGGACAAGATATTGTGGAATTTTATTACTTTAACTTCTTA
AAAGACAAAGAAGGGGGAAATTATATCCCCATGCATATTATTTAGTGCAT
TCCCATGCACACTATTTAAATCATACTTTTATTTTAGAATTTTGATGTCA
AAGAATTTAATAAGTGCTTTATAGTATCTTAAAAGAATCTACTTATTGGC
ATATGGTTTGATCCTAAACAGCTACCTTATTAGGGAAGGGAAAAACATAG
GTTCTCTCCACAGAATGCTGCAGAAGCATGATGGTTAATTCGTGTGACAA
GCTGGCAGGTGAGTTGGCTCAGTGCCCTGACTGAAGTGACAAGTAAGCTA
AATTGAGCACATGTTTTTGGCCATCCCTGCTTGCCCTTTTTCCAGATTGG
ACTACGGAAGCTGCCTTGCTTCCGCTTTTTAACTTATTGCAAAAAGAAAC
CCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_n13.b1 MSMg01no389_n13.b1 CHROMAT_FILE:
MSMg01no389_n13.b1 PHD_FILE: MSMg01no389_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:35 2005
         (333 letters)



>mm_chr14_69976359_69977093
          Length = 735

 Score =  605 bits (313), Expect = e-177
 Identities = 329/335 (98%), Gaps = 2/335 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttagctacttcttcctgtaggcac--ggacgacacatttcggtattttaaagcaacgtt 58
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||
Sbjct: 535 tttagctacttcttcctgtaggcacagggacgacacatttcggtattttaaagcaacctt 476

                                                                       
Query: 59  agctccagttacaaaagaagggtctaaaaagagttctattaaaagcagcagattctctct 118
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 475 agctccagttacaaaagaagggtctaaaaagagttctattaagagcagcagattctctct 416

                                                                       
Query: 119 ccacctcccccaaggatgctaagcattgttcataatgcagtatgattctaactgagggaa 178
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 415 ccacctcccccaaggatgctaagcgttgttcataatgcagtatgattctaactgagggaa 356

                                                                       
Query: 179 ctgcagctgctgcacatgtgtggtattaggactttctgaaaaggaggtcagaactatata 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ctgcagctgctgcacatgtgtggtattaggactttctgaaaaggaggtcagaactatata 296

                                                                       
Query: 239 gttcctcctctctgacccacagatctatttatgctacctcctgatgcggacacagaccca 298
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 295 gttcctcctctctgacccacagatctatttatgctacctcctgatgtggacacagaccca 236

                                              
Query: 299 aacataggaatgtcccaataaataaagataccttc 333
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 aacataggaatgtcccaataaataaagataccttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 735
Length adjustment: 9
Effective length of query: 324
Effective length of database: 726
Effective search space:   235224
Effective search space used:   235224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)