BAC Information

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BAC

Clone NameMSMg01-390A15
Chromosome14 (Build37)
Map Location 112,786,088 - 112,786,622
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk5, LOC100043501
Downstream geneEG223186, LOC100043509, Tpm3-rs7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390A15.T7 (MSMg01no390_a15.b1)MSMg01-390A15.TJ (MSMg01no390_a15.g1)
ACCAG492149AG492150
length751738
length of high quality
(start - end)
428 (85 - 512)537 (83 - 619)
definitionCHROMAT_FILE: MSMg01no390_a15.b1 PHD_FILE: MSMg01no390_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:49 2005CHROMAT_FILE: MSMg01no390_a15.g1 PHD_FILE: MSMg01no390_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAAACACTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCATAATATTTTGCCGACTCTCATAAAGAAGGTCAGCTA
TGACAGAAAAACTGATGATTTTAAAATGGGAACAAAACAGCCATGGAAGA
AGTTACAGAGAAAAAGTTTGGAGCTGAGACGAAAGGATGGACCATCTAGA
GACTGCCATATCCGGGGATCCATCCCATAATCAGCTTCCAAAAGCTGACA
CCATTGCATACACTAGCAAGATTTTGCTGAAAGGACCCAGATATGGCTGT
CTCTTGTGAGACTATGCCGGAGCCTGGCAAACTCTGAAGTGGATGCTCAC
AGTCAGCTATTGGATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAA
GTACCTAAGGAGCTGAAGGGGTCTGCAACCCTATAGGTGGAACAACAATA
TGAACTAACCAATACCCCCCCCCCCCCCGGAGCTCGTGTCTCTAGCTGCA
TATGAATCAGAAGAAGGCCTAGTCGGCCATCAGTGGAAAGAGAGGCCCAT
TGGTTGTGAAAACTTTATATGCCTCAGTACAGGGGAATGCCAGGGCCAAA
AANTGGGATTGGGTGGGTGGGGGGAATGGTTTTTTTTNNTTTNTTTNNNN
TTTTTNNTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCC
CCTTTTTTTTTTCTCCTCCCCCCCCTTCTTTTCTCTCCTCCCCCCCTCCT
N
NNNNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCCTGACCCAAAATAAG
TGCAAGGCCATCCAACTGACTTATGGAAGTGGTGTTCTGATTCTGAACGT
GTGCTGGAGAGCTACACACCTGTATGCGAGCACACACAGATAAAGAGCGT
CTGGAGAAGATGATAGATGGGATCTAACAATAATATAAATAAAAAATAAA
TTACTCTAGCTCATCCTATACAAAACAAAATATCAGATATCATTTGAAAG
ACAAAGAGCAGCTACTTACTTACAAAATAAATTTGTATTCAAATAAAAAG
TAATAAAAGGAAGGAAAATAATTTTATATATTAAAATGCAATCTGGACTA
GCAATTTTAACATCCAAATGAATAGAGTTTATAACAAGTGGTATTATGAG
TATTATATAATGATAAGACATGTATTGTCTAGTGAAATATTCAAGAGCTG
TACACGGCCCAACGCAGAGACATACCAGAACACAGTGGAGACGTACACAA
AGCCATGAAAGTACTTAGAAATTTTTGTAGCCTCATATGGATAATCAGTA
TAACACATGGCCAAAAGTAAGATGCTTATGTATGCTCTGTGTATGTGTGA
TCTAAGACCACATTTTAAACCCAATTTATAAGATAAACACTTTTTCTTAA
GAATAGGCCTAGCTCCATTCCGTTGCCTGTGAATAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_a15.g1 MSMg01no390_a15.g1 CHROMAT_FILE:
MSMg01no390_a15.g1 PHD_FILE: MSMg01no390_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:49 2005
         (537 letters)



>mm_chr14_112785970_112786906
          Length = 937

 Score =  988 bits (511), Expect = 0.0
 Identities = 530/537 (98%), Gaps = 2/537 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   accctgacccaaaataagtgcaaggccatccaactgacttatggaagtggtgttctgatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 accctgacccaaaataagtgcaaggccatccaactgacttatggaagtggtgttctgatt 594

                                                                       
Query: 61  ctgaacgtgtgctggagagctacacacctgtatgcgagcacacacagataaagagcgtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 ctgaacgtgtgctggagagctacacacctgtatgcgagcacacacagataaagagcgtct 534

                                                                       
Query: 121 ggagaagatgatagatgggatctaacaataatataaataaaaaataaattactctagctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ggagaagatgatagatgggatctaacaataatataaataaaaaataaattactctagctc 474

                                                                       
Query: 181 atcctatacaaaacaaaatatcagatatcatttgaaagacaaagagcagctacttactta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 atcctatacaaaacaaaatatcagatatcatttgaaagacaaagagcagctacttactta 414

                                                                       
Query: 241 caaaataaatttgtattcaaataaaaagtaataaaaggaaggaaaataattttatatatt 300
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 caaaataaaaatgtattcaaataaaaagtaataaaaggaaggaaaataattttatatatt 354

                                                                       
Query: 301 aaaatgcaatctggactagcaattttaacatccaaatgaatagagtttataacaagtggt 360
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 353 aaaatgcaatctggactagcaattttaacatccaaatgaat--agtttataacaagtggt 296

                                                                       
Query: 361 attatgagtattatataatgataagacatgtattgtctagtgaaatattcaagagctgta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 attatgagtattatataatgataagacatgtattgtctagtgaaatattcaagagctgta 236

                                                                       
Query: 421 cacggcccaacgcagagacataccagaacacagtggagacgtacacaaagccatgaaagt 480
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 catggcccaacgcagagacataccagaacacagtggagacgtacacaaagccatgaaagt 176

                                                                    
Query: 481 acttagaaatttttgtagcctcatatggataatcagtataacacatggccaaaagta 537
           |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 175 acttagaaatttttgtagcctcctatggataatcaatataacacatggccaaaagta 119


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)